Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L0U97_RS01225 Genome accession   NZ_CP090890
Coordinates   259439..260926 (-) Length   495 a.a.
NCBI ID   WP_234856761.1    Uniprot ID   -
Organism   Acinetobacter junii strain WCO-9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 254439..265926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U97_RS01205 ppa 254797..255324 (+) 528 WP_004917070.1 inorganic diphosphatase -
  L0U97_RS01210 - 255429..256757 (-) 1329 WP_234856760.1 OprD family outer membrane porin -
  L0U97_RS01215 - 257499..258269 (+) 771 WP_004917065.1 TorF family putative porin -
  L0U97_RS01220 - 258615..259403 (+) 789 WP_004957280.1 TorF family putative porin -
  L0U97_RS01225 comM 259439..260926 (-) 1488 WP_234856761.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L0U97_RS01230 - 260996..261223 (-) 228 WP_004917059.1 accessory factor UbiK family protein -
  L0U97_RS01235 glnK 261499..261837 (+) 339 WP_000780326.1 P-II family nitrogen regulator -
  L0U97_RS01240 - 261905..263317 (+) 1413 WP_004917056.1 ammonium transporter -
  L0U97_RS01245 nrdR 263489..263953 (+) 465 WP_004957298.1 transcriptional regulator NrdR -
  L0U97_RS01250 ribD 263966..265066 (+) 1101 WP_234856762.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54319.97 Da        Isoelectric Point: 7.7615

>NTDB_id=646182 L0U97_RS01225 WP_234856761.1 259439..260926(-) (comM) [Acinetobacter junii strain WCO-9]
MSFAKIYTRGLLGLHAPQIEVEVHISSGLPSLTIVGLPEAAVRESKDRVRSAIINSGFLFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEGFEFIGELALDGHLRPTSGALTIAMACQQAKHHLVLPESNVDEANQLEDFQVYPAKHL
QDVCAHFSGSSQIKAAPQRSISSLSQYQYDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLNT
QENLEVASIYSVANAQHPFGQRPFRAPHHTASAIALVGGGSQPKPGEITLAHRGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRAARQMTFPANFQFIAAMNPCPCGYAFNQDSRCQCSPENIQRYQNRISGPLLDRIDLHIDVPPLQAHELQDQKPSE
NSETVRHRVIKAYQQQIKRQQCLNQALSPQLLDQHARLDEGSAKIIEIAQQRLNLSARAYHRVLRVARTIADLAESDMIS
SSHLTEALSYRGSNS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=646182 L0U97_RS01225 WP_234856761.1 259439..260926(-) (comM) [Acinetobacter junii strain WCO-9]
ATGTCTTTTGCAAAAATTTATACAAGGGGATTATTGGGGCTACATGCCCCTCAAATCGAGGTCGAAGTTCATATTAGTTC
TGGCCTACCGTCTTTAACCATCGTGGGTTTACCTGAAGCAGCCGTCCGAGAAAGTAAAGATCGCGTTCGATCCGCAATAA
TTAATAGTGGTTTTCTTTTCCCAACCAAACGCTTAACCATCAATTTAGCACCTGCAGACTTGCCCAAAGATGGGTCACGA
CTTGACCTACCAATTGCATTGGGGATTTTAATCGCTTCAGGTCAGCTTCCTGAAAATTGTACCGAAGGATTTGAATTTAT
TGGTGAACTTGCTTTGGATGGTCATTTACGTCCAACTTCAGGGGCATTAACTATTGCTATGGCTTGTCAGCAAGCTAAGC
ATCATTTAGTTCTTCCTGAATCAAATGTGGACGAGGCAAATCAACTAGAAGACTTTCAAGTTTATCCTGCCAAACATTTA
CAAGATGTATGTGCACATTTTTCGGGCAGTAGCCAAATAAAAGCCGCACCACAACGATCTATTTCATCATTATCACAATA
TCAATACGATCTTGCCGATGTTAAAGGTCAGCTTCGTCCACGCCGAGCATTAGAAATTGCGGCTGCAGGAGGTCATTCAT
TACTCTTTAAAGGACCACCTGGCACTGGAAAAACATTACTTGCATCTCGACTGCCTTCAATTTTACCCCCTTTGAATACT
CAAGAAAATTTAGAGGTTGCTAGTATCTATTCCGTAGCAAATGCTCAACATCCTTTCGGTCAGCGCCCTTTTCGTGCACC
TCACCATACAGCATCAGCGATCGCTTTGGTTGGTGGCGGCTCTCAACCAAAACCAGGAGAAATTACGCTTGCTCATCGCG
GCGTTTTGTTTTTAGATGAATTACCTGAATTCGACCGCAAAGTACTTGAAGTTCTGCGCCAACCATTAGAGTCTAAAGAA
ATAGTAATTTCTCGCGCGGCGAGACAAATGACCTTCCCTGCTAATTTTCAGTTTATCGCTGCAATGAATCCATGCCCTTG
TGGATATGCATTTAATCAAGATAGTCGTTGTCAGTGTTCTCCTGAAAATATTCAGCGTTATCAAAATCGAATTTCAGGTC
CACTTTTGGATCGAATTGATCTGCATATCGATGTTCCACCCTTGCAAGCTCATGAGCTACAAGACCAAAAACCCTCAGAA
AACTCTGAAACTGTTCGTCATCGAGTGATAAAAGCATATCAGCAACAAATCAAAAGACAGCAATGCTTAAACCAAGCGCT
TTCACCCCAACTTTTGGATCAACATGCTCGTTTAGACGAGGGATCTGCAAAAATTATTGAAATAGCACAACAAAGATTAA
ATCTATCGGCCCGTGCTTATCATCGGGTACTTCGCGTTGCAAGAACGATTGCTGACTTAGCTGAGAGTGACATGATATCT
AGCTCACATTTAACAGAAGCCTTGTCTTATCGAGGTAGCAATAGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.406

100

0.517
  comM Glaesserella parasuis strain SC1401

50.4

100

0.509
  comM Vibrio campbellii strain DS40M4

49.899

100

0.499
  comM Haemophilus influenzae Rd KW20

49.299

100

0.497
  comM Legionella pneumophila str. Paris

48.193

100

0.485
  comM Legionella pneumophila strain ERS1305867

48.193

100

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.618

100

0.463