Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG812_RS07275 Genome accession   NZ_CP107784
Coordinates   1552253..1553029 (+) Length   258 a.a.
NCBI ID   WP_030803240.1    Uniprot ID   A0A4Z1D489
Organism   Streptomyces sp. NBC_00566     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1547253..1558029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG812_RS07260 (OG812_07260) - 1547749..1547892 (-) 144 WP_329015945.1 hypothetical protein -
  OG812_RS07265 (OG812_07265) - 1548058..1550952 (-) 2895 WP_329015942.1 vitamin B12-dependent ribonucleotide reductase -
  OG812_RS07270 (OG812_07270) nrdR 1551120..1551671 (-) 552 WP_161147348.1 transcriptional regulator NrdR -
  OG812_RS07275 (OG812_07275) dinR/lexA 1552253..1553029 (+) 777 WP_030803240.1 transcriptional repressor LexA Regulator
  OG812_RS07280 (OG812_07280) - 1553163..1555139 (-) 1977 WP_329015939.1 ATP-dependent DNA helicase -
  OG812_RS07285 (OG812_07285) - 1555301..1556065 (-) 765 WP_330235258.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27845.59 Da        Isoelectric Point: 7.0666

>NTDB_id=646182 OG812_RS07275 WP_030803240.1 1552253..1553029(+) (dinR/lexA) [Streptomyces sp. NBC_00566]
MTTTADSAAITAQDRSQGRVEPVHAMNEAAPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREIG
QAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAVSVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYEPI
PGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=646182 OG812_RS07275 WP_030803240.1 1552253..1553029(+) (dinR/lexA) [Streptomyces sp. NBC_00566]
GTGACCACGACCGCAGACAGTGCCGCCATCACCGCCCAGGACCGCTCCCAGGGCCGGGTGGAGCCGGTGCACGCGATGAA
CGAAGCCGCGCCCGAGGGACACAAGCGCTCCCTGCCGGGCCGACCTCCAGGCATCCGCGCGGACAGCTCGGGGCTCACCG
ACCGCCAGCGCCGGGTGATCGAGGTCATCCGGGACTCCGTGCAGCGTCGTGGCTACCCGCCGTCCATGCGGGAGATCGGC
CAGGCCGTCGGCCTTTCCAGCACCTCCTCCGTCGCGCACCAGCTCATGGCGCTGGAGCGCAAGGGCTTCCTGCGCCGCGA
CCCGCACCGGCCCCGCGCGTACGAGGTGCGCGGCTCCGACCAGGCGGTCAGCGTCCAGCCCACCGACACCGCCGGCAAGC
CCGCCGCGTCGTACGTCCCGCTGGTCGGCCGTATCGCGGCCGGTGGCCCGATCCTCGCGGAGGAGTCCGTCGAGGACGTC
TTCCCCCTCCCCCGGCAGCTCGTCGGCGACGGTGAGCTGTTCGTCCTCAAGGTCGTCGGCGACTCCATGATCGAGGCGGC
GATCTGCGACGGAGACTGGGTCACGGTCCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCGTGGCCGCCATGCTCGACG
GCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTCCTCCCGCACAACGCGGCCTACGAGCCGATC
CCCGGCGACGACGCCACGATCCTCGGCAAGGTCGTCGCGGTACTGCGCCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(50-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Z1D489

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.445

81.783

0.38