Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L0992_RS15965 Genome accession   NZ_CP090854
Coordinates   3580949..3582472 (-) Length   507 a.a.
NCBI ID   WP_373949252.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain YSX02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3575949..3587472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0992_RS15940 (L0992_15930) - 3575965..3576228 (+) 264 WP_373949245.1 YihD family protein -
  L0992_RS15945 (L0992_15935) ccoG 3576555..3577973 (+) 1419 WP_373949247.1 cytochrome c oxidase accessory protein CcoG -
  L0992_RS15950 (L0992_15940) - 3578044..3579030 (+) 987 WP_373951512.1 serine/threonine protein kinase -
  L0992_RS15955 (L0992_15945) - 3579086..3579685 (+) 600 WP_176680641.1 thiol:disulfide interchange protein DsbA/DsbL -
  L0992_RS15960 (L0992_15950) - 3579922..3580875 (+) 954 WP_373949250.1 DUF2860 domain-containing protein -
  L0992_RS15965 (L0992_15955) comM 3580949..3582472 (-) 1524 WP_373949252.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L0992_RS15970 (L0992_15960) ilvG 3582945..3584591 (+) 1647 WP_373949253.1 acetolactate synthase 2 catalytic subunit -
  L0992_RS15975 (L0992_15965) ilvM 3584593..3584877 (+) 285 WP_373949255.1 acetolactate synthase 2 small subunit -
  L0992_RS15980 (L0992_15970) - 3584890..3585858 (+) 969 WP_373949257.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55652.79 Da        Isoelectric Point: 7.6368

>NTDB_id=645278 L0992_RS15965 WP_373949252.1 3580949..3582472(-) (comM) [Vibrio pomeroyi strain YSX02]
MGLAIIHSRASVGVEAPEVTVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIINSRFEFPSKRITVNLAPADLPKEGGR
FDLPIALGILVASDQLPTSKIVQHEFIGELALSGELRSVKGVLPATLAADNVERCLVVPHHNGDQAALVGKGAHKSAQTL
LEVCADMCGQAQLGLYRTEQHQVDVSEHRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLRDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRVAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTQVVKQRVKQARQLMLSRNHKSNALLGSREIEKYCPLRREDAEFLETALHRLGLSIRAYHRIIKVARTIADLDGNEQ
IEKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=645278 L0992_RS15965 WP_373949252.1 3580949..3582472(-) (comM) [Vibrio pomeroyi strain YSX02]
ATGGGACTCGCGATAATTCATAGCCGAGCAAGTGTGGGTGTAGAGGCGCCAGAAGTGACCGTTGAGGTCCATATAAGCAA
TGGAATGCCCGGTTTTACGCTGGTGGGTTTGCCTGAAACGACGGTCAAGGAATCCAAAGACAGAGTAAGAAGTGCCATTA
TCAACTCTCGCTTTGAATTTCCCTCGAAAAGAATCACGGTCAACCTTGCTCCTGCAGATTTACCCAAAGAGGGCGGCCGT
TTTGACCTGCCAATCGCACTAGGGATCTTGGTGGCGTCCGATCAGCTACCCACATCAAAAATAGTTCAACATGAATTCAT
CGGCGAATTGGCACTGTCGGGAGAGCTACGCTCTGTGAAAGGGGTACTGCCCGCAACCCTCGCCGCTGATAACGTCGAAC
GTTGCTTGGTTGTGCCGCATCACAACGGAGATCAGGCAGCGTTAGTTGGAAAAGGGGCGCATAAGTCAGCACAAACCTTG
TTAGAAGTTTGCGCGGACATGTGTGGTCAGGCTCAGCTTGGTTTGTATCGAACAGAGCAACATCAAGTTGATGTGTCGGA
GCATCGTGACCTGCAAGATATTATCGGTCAACAGCAAGGTAAGCGAGCGTTGGAAATAGCCGCGGCTGGCAACCATAACT
TATTGTTCCTTGGCCCTCCCGGAACGGGTAAGACCATGCTCGCTTCTCGACTACGCGACCTATTACCTGAAATGAGTGAT
GACGAGGCGATGGAAACTGCTTCGGTGGCTTCGTTAACGCAACAAGAGATCAATCAATACAATTGGAAGCAGAGGCCATT
TCGATCGCCTCACCACTCGAGCTCGATGGCGGCACTGGTAGGTGGTGGTTCTGTCCCTCGCCCCGGTGAGATCTCTCTGG
CTCATAACGGGTTACTGTTTCTGGATGAGATGCCGGAGTTTGAACGCAAGGTGCTTGATTCATTGCGCGAGCCGCTAGAG
TCGGGAGAGATTATTATTTCACGAGTGGCAGGTAAGACTCGTTTCCCTGCGCGCTTTCAGTTGGTCGGTGCATTGAACCC
CAGCCCTACTGGTTATTACGAAGGCAATCAAGCACGCGCTAATCCGCAGATTATATTGCGCTATCTCAACCGATTGTCTG
GGCCATTGCTTGATAGGTTTGATATGTCCCTAGAGATCCCATTACTCCCTAAAGGGATGTTGGCTGAAGGTGGTGATCGC
GGTGAAACCACTCAAGTGGTAAAGCAAAGGGTCAAACAAGCGCGTCAGTTGATGCTGTCTAGGAACCATAAATCGAATGC
GTTATTAGGAAGCCGAGAAATTGAGAAATATTGCCCACTTCGACGTGAAGATGCGGAGTTTCTCGAAACCGCGCTGCATC
GATTGGGTTTATCGATTCGTGCTTATCATCGAATCATCAAGGTGGCCCGCACCATCGCTGATCTGGATGGCAATGAACAG
ATAGAGAAAAAGCATTTATCGGAAGCGCTGGGCTATCGAGCTATGGATCGCTTGCTGAAACAGCTCACGGCTCAGGCGGT
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.432

100

0.834
  comM Vibrio campbellii strain DS40M4

83.432

100

0.834
  comM Haemophilus influenzae Rd KW20

65.089

100

0.651
  comM Glaesserella parasuis strain SC1401

63.086

100

0.637
  comM Legionella pneumophila str. Paris

48.387

97.83

0.473
  comM Legionella pneumophila strain ERS1305867

48.387

97.83

0.473
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.074

100

0.424