Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L0992_RS01695 Genome accession   NZ_CP090854
Coordinates   352858..353406 (+) Length   182 a.a.
NCBI ID   WP_373949638.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain YSX02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 347858..358406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0992_RS01680 (L0992_01680) uvrA 347921..350752 (-) 2832 WP_373949633.1 excinuclease ABC subunit UvrA -
  L0992_RS01685 (L0992_01685) galU 350902..351774 (-) 873 WP_373949635.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  L0992_RS01690 (L0992_01690) qstR 351932..352579 (-) 648 WP_373949637.1 LuxR C-terminal-related transcriptional regulator Regulator
  L0992_RS01695 (L0992_01695) ssb 352858..353406 (+) 549 WP_373949638.1 single-stranded DNA-binding protein Machinery gene
  L0992_RS01700 (L0992_01700) csrD 353567..355582 (+) 2016 WP_373949640.1 RNase E specificity factor CsrD -
  L0992_RS01705 (L0992_01705) - 355585..357027 (+) 1443 WP_373949642.1 PilN domain-containing protein -
  L0992_RS01710 (L0992_01710) pilO 357027..357674 (+) 648 WP_373949644.1 type 4a pilus biogenesis protein PilO -
  L0992_RS01715 (L0992_01715) - 357667..357999 (+) 333 WP_176680832.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20303.40 Da        Isoelectric Point: 5.2358

>NTDB_id=645244 L0992_RS01695 WP_373949638.1 352858..353406(+) (ssb) [Vibrio pomeroyi strain YSX02]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGMGNNQQQGGWGQPQQPQQPQQQQQQYSAPAQQQKAPQQQ
APQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=645244 L0992_RS01695 WP_373949638.1 352858..353406(+) (ssb) [Vibrio pomeroyi strain YSX02]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCAGAAATTCGTTACATGCCTAATGG
CGGCGCGGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGATAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGCAAGCTAGCTGAAGTTGCTGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACTGAAGTGGTTGTTCAAGGCTT
CAATGGTGTAATGCAAATGCTTGGCGGCCGTGCTCAAGGTGGTATGGGTAACAACCAACAGCAAGGTGGTTGGGGTCAAC
CACAACAGCCACAACAGCCACAACAGCAGCAGCAACAATATAGTGCTCCTGCTCAACAGCAGAAAGCACCTCAACAACAA
GCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCACCGATGGATTTTGATGATGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.842

100

0.802
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.588
  ssb Neisseria meningitidis MC58

46.667

98.901

0.462
  ssb Neisseria gonorrhoeae MS11

46.667

98.901

0.462