Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   L0992_RS01690 Genome accession   NZ_CP090854
Coordinates   351932..352579 (-) Length   215 a.a.
NCBI ID   WP_373949637.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain YSX02     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 346932..357579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0992_RS01680 (L0992_01680) uvrA 347921..350752 (-) 2832 WP_373949633.1 excinuclease ABC subunit UvrA -
  L0992_RS01685 (L0992_01685) galU 350902..351774 (-) 873 WP_373949635.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  L0992_RS01690 (L0992_01690) qstR 351932..352579 (-) 648 WP_373949637.1 LuxR C-terminal-related transcriptional regulator Regulator
  L0992_RS01695 (L0992_01695) ssb 352858..353406 (+) 549 WP_373949638.1 single-stranded DNA-binding protein Machinery gene
  L0992_RS01700 (L0992_01700) csrD 353567..355582 (+) 2016 WP_373949640.1 RNase E specificity factor CsrD -
  L0992_RS01705 (L0992_01705) - 355585..357027 (+) 1443 WP_373949642.1 PilN domain-containing protein -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25134.25 Da        Isoelectric Point: 9.2442

>NTDB_id=645243 L0992_RS01690 WP_373949637.1 351932..352579(-) (qstR) [Vibrio pomeroyi strain YSX02]
MRKSRYARTLHFLCIDPSDTYLHVKEIEKHLSIILYKMTPDDLMLVDRKQSNRILLVDYREVPQLLIICPNLTVMWKNHE
IILFNVPQQLPTSELLTYGVLKGLFYNTDKKDKIAHGLQEVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=645243 L0992_RS01690 WP_373949637.1 351932..352579(-) (qstR) [Vibrio pomeroyi strain YSX02]
ATGAGAAAATCTCGATACGCTCGCACTTTACACTTTCTGTGCATCGACCCGAGTGACACTTACCTACATGTAAAAGAGAT
AGAAAAACACTTATCCATCATTCTCTACAAAATGACTCCGGACGACTTAATGCTAGTCGACAGAAAGCAGAGTAACCGCA
TCCTGCTTGTCGACTATAGGGAGGTACCACAACTACTTATTATCTGTCCCAACCTAACCGTGATGTGGAAAAACCATGAG
ATCATTTTATTCAATGTTCCACAACAGCTGCCGACTTCAGAGCTTCTAACCTACGGTGTATTAAAAGGTCTCTTTTATAA
TACCGATAAAAAAGACAAGATAGCTCATGGCCTTCAAGAAGTGATTGATGGTGATAACTGGCTACCAAGAAAAGTGACCA
ATCAACTGCTGTTTTACTACCGTAATATGGTCAATACCAACACAACACCAACCAATGTCGACTTAACTATTCGAGAGATT
CAGGTTATTCGTTGCCTTCAATCCGGCTCATCCAACACACAAATCGCCGATGACTTGTTCATTAGTGAGTTCACGGTCAA
GTCTCACCTCTATCAAATATTCCGTAAGTTAGCGGTTAAAAATAGAGTCCAAGCCATCGCTTGGGCTAACCAGAACCTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

53.023

100

0.53
  qstR Vibrio campbellii strain DS40M4

53.023

100

0.53
  qstR Vibrio cholerae strain A1552

48.598

99.535

0.484