Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L0990_RS01700 Genome accession   NZ_CP090843
Coordinates   355543..356106 (+) Length   187 a.a.
NCBI ID   WP_017055929.1    Uniprot ID   A0A109DAW8
Organism   Vibrio kanaloae strain A6-11SW3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 350543..361106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0990_RS01685 (L0990_01675) uvrA 350603..353434 (-) 2832 WP_239929199.1 excinuclease ABC subunit UvrA -
  L0990_RS01690 (L0990_01680) galU 353584..354456 (-) 873 WP_137008197.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  L0990_RS01695 (L0990_01685) qstR 354617..355264 (-) 648 WP_017055928.1 LuxR C-terminal-related transcriptional regulator Regulator
  L0990_RS01700 (L0990_01690) ssb 355543..356106 (+) 564 WP_017055929.1 single-stranded DNA-binding protein Machinery gene
  L0990_RS01705 (L0990_01695) csrD 356282..358297 (+) 2016 WP_136979402.1 RNase E specificity factor CsrD -
  L0990_RS01710 (L0990_01700) - 358300..359742 (+) 1443 WP_373938156.1 MSHA biogenesis protein MshI -
  L0990_RS01715 (L0990_01705) pilO 359742..360389 (+) 648 WP_161688085.1 type 4a pilus biogenesis protein PilO -
  L0990_RS01720 (L0990_01710) - 360382..360714 (+) 333 WP_373938158.1 MSHA biogenesis protein MshK -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20632.76 Da        Isoelectric Point: 5.2358

>NTDB_id=645111 L0990_RS01700 WP_017055929.1 355543..356106(+) (ssb) [Vibrio kanaloae strain A6-11SW3]
MASRGVNKVILVGNLGNDPEIRYMPSGSAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQSQQQYSAPAQQQP
KAPQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=645111 L0990_RS01700 WP_017055929.1 355543..356106(+) (ssb) [Vibrio kanaloae strain A6-11SW3]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAGTGG
CAGTGCTGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGAAAGCTGGCGGAAGTTGCTGGTGAATATCTGCGCAAAGGGTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACGACTGAAGTGGTTGTTCAAGGGTT
CAACGGTGTCATGCAAATGCTTGGTGGCCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAGCCACAACAACAGCAGCAATCACAACAACAGTACAGTGCTCCTGCTCAACAGCAGCCT
AAAGCACCCCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCCATT
TTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109DAW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.894

100

0.807
  ssb Glaesserella parasuis strain SC1401

56.085

100

0.567
  ssb Neisseria meningitidis MC58

45.455

100

0.455
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.455