Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   L0990_RS01695 Genome accession   NZ_CP090843
Coordinates   354617..355264 (-) Length   215 a.a.
NCBI ID   WP_017055928.1    Uniprot ID   A0A2N7JBQ5
Organism   Vibrio kanaloae strain A6-11SW3     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 349617..360264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0990_RS01685 (L0990_01675) uvrA 350603..353434 (-) 2832 WP_239929199.1 excinuclease ABC subunit UvrA -
  L0990_RS01690 (L0990_01680) galU 353584..354456 (-) 873 WP_137008197.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  L0990_RS01695 (L0990_01685) qstR 354617..355264 (-) 648 WP_017055928.1 LuxR C-terminal-related transcriptional regulator Regulator
  L0990_RS01700 (L0990_01690) ssb 355543..356106 (+) 564 WP_017055929.1 single-stranded DNA-binding protein Machinery gene
  L0990_RS01705 (L0990_01695) csrD 356282..358297 (+) 2016 WP_136979402.1 RNase E specificity factor CsrD -
  L0990_RS01710 (L0990_01700) - 358300..359742 (+) 1443 WP_373938156.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24989.19 Da        Isoelectric Point: 9.9849

>NTDB_id=645110 L0990_RS01695 WP_017055928.1 354617..355264(-) (qstR) [Vibrio kanaloae strain A6-11SW3]
MRKSRYARTLHFLCIDPSDTHLHIKAIEKHLSIPLYKMTTDDLMLVDRKQSNRILLVDYKAVPQLLAIFPNLYVIWKNNE
ILLFNVPQPLPTSELLNYGVLKGLFYDSEKKIKIAKGLREVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=645110 L0990_RS01695 WP_017055928.1 354617..355264(-) (qstR) [Vibrio kanaloae strain A6-11SW3]
ATGAGAAAATCTCGATATGCTCGCACTTTACACTTTCTGTGCATCGATCCCAGCGACACTCACCTACACATAAAAGCGAT
AGAAAAGCATTTGTCTATTCCTCTCTACAAAATGACAACGGACGATTTGATGCTGGTAGATAGGAAACAGAGCAACCGTA
TTCTACTCGTCGATTACAAAGCGGTTCCACAATTACTTGCCATATTCCCTAACTTGTACGTTATATGGAAAAATAATGAG
ATCCTTTTATTTAATGTTCCGCAGCCGCTTCCTACCTCGGAGCTCCTTAACTATGGCGTACTAAAAGGGTTATTTTATGA
TTCCGAGAAAAAAATCAAAATAGCAAAAGGTCTTCGAGAGGTCATTGATGGTGATAACTGGTTACCGAGAAAGGTAACGA
ACCAACTGCTGTTTTATTACCGCAACATGGTCAACACCAACACAACACCCACTAATGTCGATTTAACCATCCGAGAGATC
CAAGTTATTCGCTGTCTTCAATCAGGTTCATCAAACACTCAGATAGCCGATGATTTATTTATTAGCGAGTTCACCGTCAA
ATCTCATCTCTATCAGATATTTCGCAAGTTAGCGGTTAAAAATAGAGTCCAAGCCATTGCTTGGGCAAATCAGAACTTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7JBQ5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

54.419

100

0.544
  qstR Vibrio parahaemolyticus RIMD 2210633

53.023

100

0.53
  qstR Vibrio cholerae strain A1552

48.598

99.535

0.484