Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L0Y15_RS01615 Genome accession   NZ_CP090796
Coordinates   339057..339581 (+) Length   174 a.a.
NCBI ID   WP_003860284.1    Uniprot ID   A0A9Q2WCG9
Organism   Enterobacter hormaechei strain Y-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 334057..344581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y15_RS01595 (L0Y15_01595) aphA 334381..335094 (+) 714 WP_022650226.1 acid phosphatase AphA -
  L0Y15_RS01600 (L0Y15_01600) - 335207..335623 (+) 417 WP_022650227.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  L0Y15_RS01605 (L0Y15_01605) - 335626..335979 (+) 354 WP_003860288.1 MmcQ/YjbR family DNA-binding protein -
  L0Y15_RS01610 (L0Y15_01610) uvrA 335983..338805 (-) 2823 WP_003860287.1 excinuclease ABC subunit UvrA -
  L0Y15_RS01615 (L0Y15_01615) ssb 339057..339581 (+) 525 WP_003860284.1 single-stranded DNA-binding protein SSB1 Machinery gene
  L0Y15_RS01620 (L0Y15_01620) - 339801..340973 (+) 1173 WP_072667565.1 site-specific integrase -
  L0Y15_RS01625 (L0Y15_01625) - 340979..342562 (+) 1584 WP_064115021.1 tyrosine-type recombinase/integrase -
  L0Y15_RS01630 (L0Y15_01630) - 342555..344564 (+) 2010 WP_072667564.1 integrase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18650.66 Da        Isoelectric Point: 5.2456

>NTDB_id=644831 L0Y15_RS01615 WP_003860284.1 339057..339581(+) (ssb) [Enterobacter hormaechei strain Y-2]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGQEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAPAP
SNEPPMDFDDDIPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=644831 L0Y15_RS01615 WP_003860284.1 339057..339581(+) (ssb) [Enterobacter hormaechei strain Y-2]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAAATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCTGAAGTGGCCGGTGAGTATCTGCGTAAAGGCTCTCAGGTTTACATT
GAAGGCCAACTGCGTACCCGCAAATGGACCGATCAATCCGGTCAGGAAAAATACACCACGGAAGTGGTGGTGAATGTTGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGCGGCGCACCGGCAGGTGGCGGCCAGCAGCAGGGCGGTTGGGGCC
AGCCTCAGCAGCCGCAGGGCGGCAATCAGTTTAGCGGCGGCGCGCAGTCCCGTCCGCAGCAGCAGTCTGCTCCGGCACCG
TCTAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.793
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.609
  ssb Neisseria meningitidis MC58

47.191

100

0.483
  ssb Neisseria gonorrhoeae MS11

47.191

100

0.483
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.111

100

0.374