Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L0Y94_RS15205 Genome accession   NZ_CP090782
Coordinates   535630..536178 (+) Length   182 a.a.
NCBI ID   WP_006398270.1    Uniprot ID   A0A1W0ZR43
Organism   Burkholderia multivorans strain 2004Ycf1069VI     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 530630..541178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y94_RS15195 (L0Y94_15195) uvrA 531184..534069 (-) 2886 WP_006411685.1 excinuclease ABC subunit UvrA -
  L0Y94_RS15200 (L0Y94_15200) - 534340..535527 (+) 1188 WP_006406614.1 MFS transporter -
  L0Y94_RS15205 (L0Y94_15205) ssb 535630..536178 (+) 549 WP_006398270.1 single-stranded DNA-binding protein Machinery gene
  L0Y94_RS15210 (L0Y94_15210) - 537334..537960 (+) 627 WP_006410429.1 DNA-3-methyladenine glycosylase -
  L0Y94_RS15215 (L0Y94_15215) - 538298..539062 (+) 765 WP_035488886.1 ParA family protein -
  L0Y94_RS15220 (L0Y94_15220) phaP 539520..540113 (+) 594 WP_006406593.1 TIGR01841 family phasin -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 18704.50 Da        Isoelectric Point: 5.3476

>NTDB_id=644774 L0Y94_RS15205 WP_006398270.1 535630..536178(+) (ssb) [Burkholderia multivorans strain 2004Ycf1069VI]
MASVNKVILVGNLGADPEVRYLPSGDAVANIRLATTDRYKDKASGEFKEMTEWHRVAFFGRLAEIVSEYLKKGSSVYIEG
RIRTRKWQGQDGQDRYSTEIVADQMQMLGGRGGSGGGGGGDEGGYGGGYGGGGGGGRGEQMERGGGGGRASGAARGGGGG
GQSRPSAPAGGGFDEMDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=644774 L0Y94_RS15205 WP_006398270.1 535630..536178(+) (ssb) [Burkholderia multivorans strain 2004Ycf1069VI]
ATGGCATCCGTCAACAAGGTCATCCTCGTCGGCAATCTCGGCGCCGATCCTGAAGTCCGTTACCTGCCGAGCGGCGACGC
GGTTGCGAACATCCGTCTCGCGACCACCGACCGCTACAAGGACAAGGCGAGCGGCGAGTTCAAGGAAATGACCGAGTGGC
ATCGCGTCGCGTTCTTCGGCCGTCTCGCCGAAATCGTCAGCGAATACCTGAAGAAGGGCTCGTCGGTCTACATCGAAGGC
CGGATCCGCACGCGCAAGTGGCAAGGCCAGGACGGCCAGGATCGCTATTCGACCGAAATCGTCGCCGACCAGATGCAGAT
GCTCGGCGGCCGCGGCGGCTCGGGCGGTGGCGGTGGCGGTGACGAAGGCGGTTACGGCGGCGGCTACGGTGGTGGTGGCG
GCGGCGGTCGCGGCGAGCAGATGGAGCGCGGCGGCGGTGGCGGTCGTGCAAGCGGCGCGGCGCGTGGCGGTGGCGGCGGT
GGCCAGAGCCGCCCGAGCGCGCCGGCTGGCGGCGGCTTCGACGAGATGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W0ZR43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.521

100

0.533
  ssb Glaesserella parasuis strain SC1401

46.809

100

0.484
  ssb Neisseria gonorrhoeae MS11

44.262

100

0.445
  ssb Neisseria meningitidis MC58

43.716

100

0.44
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.264

100

0.363