Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L0Z67_RS00905 Genome accession   NZ_CP090667
Coordinates   179770..181281 (+) Length   503 a.a.
NCBI ID   WP_062568186.1    Uniprot ID   -
Organism   Pseudoalteromonas sp. PB2-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 174770..186281
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Z67_RS00865 - 175054..175674 (+) 621 WP_405128359.1 dUTP diphosphatase -
  L0Z67_RS00870 yrfG 175687..176346 (-) 660 WP_062568268.1 GMP/IMP nucleotidase -
  L0Z67_RS00875 nudE 176408..176980 (+) 573 WP_193989015.1 ADP compounds hydrolase NudE -
  L0Z67_RS00880 cysQ 176973..177770 (+) 798 WP_062568266.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  L0Z67_RS00900 - 179118..179732 (+) 615 WP_062568185.1 trimeric intracellular cation channel family protein -
  L0Z67_RS00905 comM 179770..181281 (+) 1512 WP_062568186.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L0Z67_RS00910 - 181286..181990 (-) 705 WP_062568187.1 response regulator transcription factor -
  L0Z67_RS00915 - 182155..184656 (-) 2502 WP_405128360.1 prolyl oligopeptidase family serine peptidase -
  L0Z67_RS00920 - 184802..185866 (+) 1065 WP_062568189.1 hemolysin family protein -

Sequence

Protein


Download         Length: 503 a.a.        Molecular weight: 55264.17 Da        Isoelectric Point: 6.5944

>NTDB_id=644275 L0Z67_RS00905 WP_062568186.1 179770..181281(+) (comM) [Pseudoalteromonas sp. PB2-1]
MSLARIFSRAQIGVQAPEVIVEVHLGNGLPAFHIVGLPETSVKEAKDRVRSALENSQFGFPDQRITVNLAPADLPKEGGR
FDLAIAVGILVASGQISCPDIHRYEFYGELALNGEVRGVNAILPSVLGAKEKGRCCFLPADNDSLASLVSGVARKAVYSI
QDVWNDLLNQQPLPLNIEYPEQELDRESLLDLSDVKGQPGAKRVLEIAAAGGHNLLFLGPPGTGKSMLAQRMPTIMPAMS
DDEAISTAALYSIIGQSVDLANWRERPFRNPHHTCSAVALVGGSSNPKPGEISLAHNGVLFLDELPEFERKVLDSLREPM
ETGVVTISRAARQMEFPSQFQLIAALNPSPTGSHTDKRATPDQVLRYLSRVSGPFIDRIDLQIELPRLTSSQLQSTEIEE
SSEQVRSRVERAYAIQLERQGKVNARLNNKEMNRYCILAAAELQFLAKASEKLALSPRSYHRVIKVARTISDLKAQPNIT
LSELKEALNYRAFERLISQLTQL

Nucleotide


Download         Length: 1512 bp        

>NTDB_id=644275 L0Z67_RS00905 WP_062568186.1 179770..181281(+) (comM) [Pseudoalteromonas sp. PB2-1]
GTGTCATTAGCTCGTATTTTCTCTCGTGCACAAATAGGCGTACAAGCACCAGAAGTCATAGTTGAAGTGCATTTAGGTAA
TGGTTTACCGGCTTTTCATATAGTTGGTCTGCCCGAAACATCTGTGAAGGAAGCGAAAGATCGCGTAAGAAGCGCACTTG
AAAACTCACAGTTTGGCTTTCCTGATCAGCGGATCACGGTTAATTTAGCACCCGCAGACTTGCCTAAAGAGGGAGGGCGC
TTTGATTTAGCCATCGCCGTAGGCATCTTGGTGGCATCAGGGCAGATTAGTTGTCCCGATATTCATCGTTATGAATTTTA
TGGTGAGCTTGCCTTAAATGGGGAAGTAAGAGGCGTGAATGCGATTTTGCCCTCCGTGCTCGGTGCTAAAGAGAAAGGCC
GTTGTTGCTTTCTTCCTGCCGATAATGACTCCTTGGCGAGTCTTGTTTCTGGGGTCGCACGAAAAGCAGTATATTCTATT
CAGGATGTCTGGAACGACTTACTTAACCAGCAACCTCTTCCTTTGAATATTGAATACCCAGAGCAGGAATTAGATAGGGA
GTCTCTACTCGATTTAAGCGATGTTAAAGGGCAACCAGGCGCGAAACGCGTATTAGAAATTGCCGCTGCTGGTGGGCATA
ATTTGTTATTTTTAGGCCCTCCGGGTACAGGCAAATCTATGCTCGCACAGCGTATGCCGACAATTATGCCCGCCATGTCT
GACGATGAAGCGATTAGTACCGCAGCGCTTTATTCAATTATTGGTCAATCAGTCGATTTAGCGAATTGGCGTGAGCGTCC
CTTTCGCAATCCTCATCATACGTGTTCAGCAGTCGCACTTGTTGGTGGTTCGTCAAACCCAAAGCCAGGGGAAATTTCAT
TAGCCCACAATGGAGTGCTTTTTTTGGATGAGCTGCCTGAATTTGAGAGAAAAGTACTCGACTCATTGCGTGAACCTATG
GAAACGGGCGTAGTAACGATATCAAGAGCCGCGAGGCAAATGGAGTTCCCTTCGCAATTTCAGTTGATTGCAGCCCTTAA
CCCAAGCCCAACAGGTAGCCACACAGATAAGCGAGCGACGCCCGATCAAGTGCTACGTTACTTATCTCGGGTGTCAGGGC
CATTTATCGATCGTATTGATTTACAAATTGAGTTGCCAAGATTAACCAGTAGCCAACTACAAAGTACTGAAATAGAAGAA
AGCAGTGAGCAAGTTCGCTCACGTGTTGAGCGTGCCTACGCAATTCAGCTTGAAAGACAAGGCAAAGTGAATGCGCGTTT
GAATAATAAAGAAATGAATCGTTACTGTATTTTAGCAGCCGCAGAGCTTCAGTTTTTAGCTAAAGCCAGTGAAAAACTGG
CTTTATCGCCTCGCTCTTATCATCGGGTAATTAAAGTGGCACGCACCATCAGCGATTTAAAAGCGCAGCCAAATATAACC
TTAAGTGAGCTAAAAGAAGCATTAAATTATCGGGCATTTGAGCGGCTAATTAGTCAGCTAACGCAACTCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.842

100

0.561
  comM Haemophilus influenzae Rd KW20

54.224

100

0.549
  comM Glaesserella parasuis strain SC1401

53.953

100

0.543
  comM Vibrio campbellii strain DS40M4

53.571

100

0.537
  comM Legionella pneumophila str. Paris

48.893

98.807

0.483
  comM Legionella pneumophila strain ERS1305867

48.893

98.807

0.483
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.564

100

0.437