Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LZI70_RS07065 Genome accession   NZ_CP090614
Coordinates   1623335..1624858 (+) Length   507 a.a.
NCBI ID   WP_255229567.1    Uniprot ID   -
Organism   Vibrio pelagius strain WXL662     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1618335..1629858
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZI70_RS07050 (LZI70_07040) - 1619968..1620918 (-) 951 WP_255229565.1 branched-chain amino acid transaminase -
  LZI70_RS07055 (LZI70_07045) ilvM 1620931..1621215 (-) 285 WP_032548651.1 acetolactate synthase 2 small subunit -
  LZI70_RS07060 (LZI70_07050) ilvG 1621217..1622863 (-) 1647 WP_255229566.1 acetolactate synthase 2 catalytic subunit -
  LZI70_RS07065 (LZI70_07055) comM 1623335..1624858 (+) 1524 WP_255229567.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LZI70_RS07070 (LZI70_07060) - 1624891..1625847 (-) 957 WP_255229568.1 DUF2860 domain-containing protein -
  LZI70_RS07075 (LZI70_07065) - 1625996..1626595 (-) 600 WP_255229569.1 thiol:disulfide interchange protein DsbA/DsbL -
  LZI70_RS07080 (LZI70_07070) - 1626646..1627632 (-) 987 WP_255229570.1 serine/threonine protein kinase -
  LZI70_RS07085 (LZI70_07075) ccoG 1627707..1629125 (-) 1419 WP_255229571.1 cytochrome c oxidase accessory protein CcoG -
  LZI70_RS07090 (LZI70_07080) - 1629435..1629698 (-) 264 WP_032548658.1 YihD family protein -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55236.30 Da        Isoelectric Point: 7.1619

>NTDB_id=643990 LZI70_RS07065 WP_255229567.1 1623335..1624858(+) (comM) [Vibrio pelagius strain WXL662]
MGLAIIHSRASVGVEAPAVTVEVHISNGMPGFSLVGLPETTVKESKDRVRSAIINSRFEFPAKRITVNLAPADLPKEGGR
FDLPIALGILVASEQLPESKVLSHEFIGELALSGELRTVKGVLPATLACDKANRALVVPHDNGEQAALVGQGEHKSAQTL
LEVCGYLCGQNTLDLNDVSELRHQPHTTRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
DEAMETASVASLTQQEINQYNWKQRPFRSPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFERKVLDSLREPLE
SGEIIISRAAGKTRFPARFQLVGALNPSPTGYYEGNQARANPQIILRYLNRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GEGTQVVKQRVVDARSTMVERGGKPNALLTSREIEKYCPLDKQDAQFLETALHRLGLSIRAYHRIIKVARTIADLEGSEQ
IKKKHLSEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=643990 LZI70_RS07065 WP_255229567.1 1623335..1624858(+) (comM) [Vibrio pelagius strain WXL662]
ATGGGACTCGCAATTATTCATAGTCGCGCCAGCGTCGGTGTGGAAGCGCCTGCGGTCACCGTTGAGGTTCATATCAGCAA
CGGAATGCCAGGGTTCTCTTTGGTTGGCTTACCAGAGACAACGGTCAAAGAGTCGAAAGATCGCGTGCGCAGTGCAATCA
TCAATTCACGCTTTGAATTTCCGGCTAAACGTATCACAGTCAACCTTGCTCCTGCTGATCTTCCGAAAGAGGGAGGGCGG
TTCGATCTGCCGATCGCTCTGGGTATCTTAGTCGCTTCTGAGCAGTTGCCAGAAAGTAAAGTATTGAGTCATGAGTTTAT
TGGTGAGCTCGCTCTGTCTGGTGAATTGCGTACTGTCAAAGGGGTATTACCCGCCACATTGGCGTGTGATAAGGCGAATC
GTGCGCTGGTGGTTCCGCATGATAACGGCGAGCAAGCGGCTTTGGTTGGACAGGGGGAACATAAATCTGCTCAGACATTA
TTGGAGGTCTGCGGCTACCTTTGTGGTCAGAATACATTAGATTTAAACGATGTATCTGAGCTGCGACATCAACCACATAC
TACTCGAGACCTGCAAGACATTATTGGTCAGCAGCAAGGTAAACGAGCGTTAGAGATCGCGGCGGCTGGCAATCATAACT
TACTGTTTTTAGGTCCACCCGGTACGGGCAAAACCATGCTTGCCTCACGCCTTTGTGATTTATTGCCTGAGATGAGTGAT
GACGAAGCGATGGAGACGGCTTCTGTGGCGTCACTCACTCAGCAGGAGATCAATCAATACAACTGGAAGCAGCGTCCCTT
TCGTTCTCCACACCATTCAAGCTCTATGGCGGCACTGGTGGGCGGTGGTTCTGTGCCAAGGCCGGGAGAAATATCGCTGG
CGCACAATGGACTGCTGTTCCTCGATGAGATGCCTGAGTTTGAAAGGAAGGTGCTCGACTCATTGCGAGAGCCGTTAGAG
TCTGGAGAGATCATCATTTCACGAGCTGCGGGAAAAACTCGTTTCCCTGCTCGGTTTCAATTGGTTGGTGCCCTCAATCC
AAGCCCAACGGGCTACTATGAGGGCAATCAAGCGCGTGCAAACCCACAGATTATTTTGCGTTATTTGAACCGGTTATCAG
GGCCGCTGTTAGATCGCTTTGATATGTCATTGGAGATCCCGCTACTACCTAAAGGCATGCTCGCCGAGGGGGGCGATCGA
GGAGAAGGGACACAGGTCGTGAAGCAGCGTGTGGTTGACGCAAGGTCTACCATGGTCGAGCGCGGAGGAAAGCCCAATGC
ACTCTTGACCAGTCGTGAAATTGAAAAGTATTGCCCACTCGATAAGCAAGATGCTCAATTCTTGGAGACGGCGCTGCATC
GGCTTGGATTATCAATTCGTGCTTATCATCGCATCATCAAGGTTGCTCGCACCATTGCAGATCTTGAAGGGAGTGAACAG
ATTAAAAAGAAACACCTCTCAGAGGCGTTGGGGTATCGAGCAATGGACAGATTATTGAAGCAGTTGACGGCACAAGCGGT
ATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

83.037

100

0.83
  comM Vibrio campbellii strain DS40M4

82.84

100

0.828
  comM Haemophilus influenzae Rd KW20

65.089

100

0.651
  comM Glaesserella parasuis strain SC1401

63.672

100

0.643
  comM Legionella pneumophila str. Paris

49.102

98.817

0.485
  comM Legionella pneumophila strain ERS1305867

49.102

98.817

0.485
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.688

99.803

0.426