Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LZI70_RS05410 Genome accession   NZ_CP090614
Coordinates   1271068..1271616 (-) Length   182 a.a.
NCBI ID   WP_032552989.1    Uniprot ID   A0A066URH4
Organism   Vibrio pelagius strain WXL662     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1266068..1276616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZI70_RS05390 (LZI70_05380) - 1266459..1266794 (-) 336 WP_255231564.1 MSHA biogenesis protein MshK -
  LZI70_RS05395 (LZI70_05385) pilO 1266787..1267434 (-) 648 WP_255231565.1 type 4a pilus biogenesis protein PilO -
  LZI70_RS05400 (LZI70_05390) - 1267437..1268870 (-) 1434 WP_255231566.1 MSHA biogenesis protein MshI -
  LZI70_RS05405 (LZI70_05395) csrD 1268873..1270888 (-) 2016 WP_255231567.1 RNase E specificity factor CsrD -
  LZI70_RS05410 (LZI70_05400) ssb 1271068..1271616 (-) 549 WP_032552989.1 single-stranded DNA-binding protein Machinery gene
  LZI70_RS05415 (LZI70_05405) qstR 1271893..1272540 (+) 648 WP_255231568.1 LuxR C-terminal-related transcriptional regulator Regulator
  LZI70_RS05420 (LZI70_05410) galU 1272690..1273562 (+) 873 WP_255231569.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LZI70_RS05425 (LZI70_05415) uvrA 1273702..1276533 (+) 2832 WP_255231570.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20004.07 Da        Isoelectric Point: 4.9269

>NTDB_id=643985 LZI70_RS05410 WP_032552989.1 1271068..1271616(-) (ssb) [Vibrio pelagius strain WXL662]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGGQQQQGGWGQPQQPQQQQYSAPAQQQAPQQQ
APQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=643985 LZI70_RS05410 WP_032552989.1 1271068..1271616(-) (ssb) [Vibrio pelagius strain WXL662]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAATGG
CGGTGCAGTAGCGAACATTACCATTGCAACGTCAGAATCATGGCGTGATAAAGCAACTGGCGAGCAGCGCGAGAAAACAG
AATGGCACCGTGTCGCTCTGTTTGGCAAACTAGCAGAAGTTGCAGGTGAATACCTACGTAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAGACGCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACAACAGAAGTTGTGGTTCAAGGCTT
TAACGGTGTAATGCAAATGCTTGGCGGTCGTGCCCAAGGCGGCGCACCAGCTCAAGGCGGTATGGGTGGTCAACAGCAAC
AAGGTGGTTGGGGTCAACCTCAGCAACCACAACAGCAGCAATACAGTGCACCTGCTCAGCAGCAAGCACCTCAACAGCAA
GCTCCACAACAGGCTCAACCTCAATATAATGAGCCTCCAATGGATTTTGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066URH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

82.514

100

0.83
  ssb Glaesserella parasuis strain SC1401

54.974

100

0.577
  ssb Neisseria meningitidis MC58

47.514

99.451

0.473
  ssb Neisseria gonorrhoeae MS11

47.514

99.451

0.473