Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   LZI70_RS05415 Genome accession   NZ_CP090614
Coordinates   1271893..1272540 (+) Length   215 a.a.
NCBI ID   WP_255231568.1    Uniprot ID   -
Organism   Vibrio pelagius strain WXL662     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1266893..1277540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZI70_RS05400 (LZI70_05390) - 1267437..1268870 (-) 1434 WP_255231566.1 MSHA biogenesis protein MshI -
  LZI70_RS05405 (LZI70_05395) csrD 1268873..1270888 (-) 2016 WP_255231567.1 RNase E specificity factor CsrD -
  LZI70_RS05410 (LZI70_05400) ssb 1271068..1271616 (-) 549 WP_032552989.1 single-stranded DNA-binding protein Machinery gene
  LZI70_RS05415 (LZI70_05405) qstR 1271893..1272540 (+) 648 WP_255231568.1 LuxR C-terminal-related transcriptional regulator Regulator
  LZI70_RS05420 (LZI70_05410) galU 1272690..1273562 (+) 873 WP_255231569.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LZI70_RS05425 (LZI70_05415) uvrA 1273702..1276533 (+) 2832 WP_255231570.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 25047.48 Da        Isoelectric Point: 9.3241

>NTDB_id=643986 LZI70_RS05415 WP_255231568.1 1271893..1272540(+) (qstR) [Vibrio pelagius strain WXL662]
MKVSRYTRTLHFLCSDTEQSHLYINEIEKLLSIPMYRMPLGELMCVNKKQSNRILLVDYKQLPELLEELPNLAVLWKNFE
LILFNVEKPLPTQEIIRFGHLKGLFYCSDTKPKIAKGITKIIDGESWLPRKITSQLLFYYRNIVNISTCPITVDLTIREL
QVIRCLQTGASNTQIAEDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLIS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=643986 LZI70_RS05415 WP_255231568.1 1271893..1272540(+) (qstR) [Vibrio pelagius strain WXL662]
ATGAAAGTATCAAGATATACTCGCACCCTACACTTTTTATGTTCAGATACAGAACAGAGTCACCTGTACATCAATGAAAT
AGAAAAGTTGCTGTCTATTCCAATGTATAGAATGCCTCTGGGAGAGTTGATGTGTGTCAATAAAAAGCAGAGCAACCGAA
TCCTGTTGGTCGATTACAAACAACTGCCTGAACTATTAGAGGAACTCCCCAACCTTGCCGTTTTGTGGAAGAACTTTGAA
CTCATTCTGTTCAATGTTGAAAAGCCATTACCAACTCAAGAGATCATCCGCTTCGGCCACTTAAAAGGGTTGTTCTACTG
CAGCGATACGAAACCGAAGATAGCTAAAGGCATCACTAAGATCATTGATGGTGAGAGTTGGTTACCCCGAAAAATCACCA
GTCAGTTACTGTTCTACTATCGCAATATCGTCAACATCAGCACTTGTCCCATAACGGTCGACTTAACTATCCGTGAATTA
CAAGTGATACGCTGTCTTCAAACTGGCGCTTCGAATACCCAGATCGCAGAAGATCTCTTCATCAGTGAATTCACAGTCAA
ATCCCATCTTTATCAAATCTTTCGTAAACTGGCTGTAAAGAATCGAGTGCAAGCTATAGCGTGGGCAAACCAGAACCTAA
TTTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

54.884

100

0.549
  qstR Vibrio parahaemolyticus RIMD 2210633

52.558

100

0.526
  qstR Vibrio cholerae strain A1552

48.598

99.535

0.484