Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L0Y27_RS20415 Genome accession   NZ_CP090592
Coordinates   4592041..4593567 (+) Length   508 a.a.
NCBI ID   WP_256599104.1    Uniprot ID   -
Organism   Pectobacterium aroidearum strain QJ311     
Function   require for natural transformation (predicted from homology)   
Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 4593637..4594812 4592041..4593567 flank 70


Gene organization within MGE regions


Location: 4592041..4594812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y27_RS20415 (L0Y27_20395) comM 4592041..4593567 (+) 1527 WP_256599104.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L0Y27_RS20420 (L0Y27_20400) - 4593637..4594812 (-) 1176 WP_181845211.1 IS4 family transposase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55427.01 Da        Isoelectric Point: 6.8238

>NTDB_id=643755 L0Y27_RS20415 WP_256599104.1 4592041..4593567(+) (comM) [Pectobacterium aroidearum strain QJ311]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LEVCAFLSGEEELLSCSDIALAPQSEEDALDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLIAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQRH
QGESSATIRERVLIARQIQLKRANKINALLTSREIEQHCALEAPDAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRK
SIERKHIAEALSYRSMDRLLIQLHRSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=643755 L0Y27_RS20415 WP_256599104.1 4592041..4593567(+) (comM) [Pectobacterium aroidearum strain QJ311]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGCGTACAAGCGCCGGACGTTTATATCGAAGTTCACATCAGCAG
TGGGCTACCGGCCCTAACGCTAGTTGGTTTACCAGAAACTACCGTTAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCCAAGCGCATCACGGTCAACCTTGCTCCCGCAGACCTGCCAAAAGAAGGGGGGCGC
TACGACCTGCCGATTGCTCTGGCGATTCTGGCGGCATCAGAACAAATCGATGGGGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAATTAGGCCTGTCTGGCACGCTACGTGGCGTCAATGGCGCAATTCCCGCCGCACTGGAAGCCATAAAGTCAGGCC
GCCAGCTAATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAGGGTGAAGCGTTAATGGCTGGGCATTTG
TTGGAAGTGTGTGCTTTTCTCAGCGGGGAAGAGGAGCTACTCAGTTGCTCCGATATCGCACTGGCTCCGCAGTCAGAAGA
AGATGCACTCGACCTGAAGGATATCATCGGTCAGGAGCAGGCTAAACGCGCGTTGGAAATCGCGGCGGCTGGCGGTCACA
ATCTGCTATTGCTGGGGCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCCGATTAGGCAATCTGATGCCACCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCTATCAACAGCCTCATCAACATTGATGCCACCATGACGCGCTGGCGTGCCAGACC
GTTCAGAGCGCCTCACCATAGTTCTTCTATGGCCGCACTCGTGGGGGGAGGATCGTTGCCAAAACCCGGAGAAATCTCGC
TTGCTCACAACGGCGTGCTGTTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTTCTGGATTCTCTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGGACGCGCGCCAAAGTGTGCTACCCGGCACGCGTGCAGCTCATCGCTGCAATGAA
TCCCAGCCCATCAGGCCACTATCAAGGCATCCATAACCGCTTACCCGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCGATCGAAGTTCCTTTGCTACCACCAGGGGTTTTATCTCAGCAACGTCAT
CAGGGAGAAAGCAGCGCAACAATTCGCGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTGCTCACCTCACGCGAAATAGAACAACACTGTGCGTTAGAAGCGCCTGATGCGGCTTATCTGGAAGAAGTGATGA
ACAAACTCGGCTTATCCGTACGCGCCTGGCACAGGATATTGAAAGTCGCACGCACGATCGCTGACCTCGGCGATCGAAAG
AGCATAGAGAGAAAGCATATTGCCGAAGCACTGAGCTATCGCAGTATGGATCGATTGCTCATCCAGCTCCACAGAAGTCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.636

99.606

0.634
  comM Glaesserella parasuis strain SC1401

63.314

99.803

0.632
  comM Vibrio cholerae strain A1552

63.618

99.016

0.63
  comM Vibrio campbellii strain DS40M4

62.451

99.606

0.622
  comM Legionella pneumophila str. Paris

50.699

98.622

0.5
  comM Legionella pneumophila strain ERS1305867

50.699

98.622

0.5
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.14

99.803

0.47