Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L0Y30_RS01115 Genome accession   NZ_CP090591
Coordinates   246883..248409 (-) Length   508 a.a.
NCBI ID   WP_015842126.1    Uniprot ID   C6DHH5
Organism   Pectobacterium aroidearum strain QJ313     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 241883..253409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y30_RS01090 (L0Y30_01090) ytfR 242039..243559 (+) 1521 WP_181845209.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  L0Y30_RS01095 (L0Y30_01095) ytfT 243546..244556 (+) 1011 WP_181848830.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  L0Y30_RS01100 (L0Y30_01100) yjfF 244556..245518 (+) 963 WP_256542709.1 galactofuranose ABC transporter, permease protein YjfF -
  L0Y30_RS01105 (L0Y30_01105) hdfR 245540..246367 (-) 828 WP_015842127.1 HTH-type transcriptional regulator HdfR -
  L0Y30_RS01110 (L0Y30_01110) - 246488..246826 (+) 339 WP_014701822.1 DUF413 domain-containing protein -
  L0Y30_RS01115 (L0Y30_01115) comM 246883..248409 (-) 1527 WP_015842126.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L0Y30_RS01120 (L0Y30_01120) ilvL 248817..248915 (+) 99 WP_071531109.1 ilv operon leader peptide -
  L0Y30_RS01125 (L0Y30_01125) ilvG 249056..250702 (+) 1647 WP_256542710.1 acetolactate synthase 2 catalytic subunit -
  L0Y30_RS01130 (L0Y30_01130) ilvM 250760..251020 (+) 261 WP_010294673.1 acetolactate synthase 2 small subunit -
  L0Y30_RS01135 (L0Y30_01135) - 251047..251973 (+) 927 WP_015842124.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55425.94 Da        Isoelectric Point: 6.6928

>NTDB_id=643713 L0Y30_RS01115 WP_015842126.1 246883..248409(-) (comM) [Pectobacterium aroidearum strain QJ313]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LEVCAFLSGEEELLSCSDIALAPQSEEDALDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQRH
QGESSATIRERVLIARQIQLKRANKINALLTSREIEQHCALEAPDAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRN
NIERKHIAEALSYRSMDRLLIQLHRSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=643713 L0Y30_RS01115 WP_015842126.1 246883..248409(-) (comM) [Pectobacterium aroidearum strain QJ313]
ATGTCATTGGCAGTTACCTATACTCGAGCAATGATTGGCGTACAAGCGCCGGACGTTTATATCGAAGTTCACATCAGCAG
TGGGCTACCGGCCCTAACGCTAGTTGGCTTACCAGAAACTACCGTTAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCCAAGCGCATCACGGTCAACCTTGCTCCCGCAGACCTGCCAAAAGAAGGGGGACGC
TACGACCTGCCGATTGCTCTGGCGATTCTGGCAGCATCAGAACAAATCGATGGGGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAATTAGGCCTGTCTGGCACGCTACGTGGCGTCAATGGCGCAATTCCCGCCGCACTGGAAGCCATAAAGTCAGGCC
GCCAGCTAATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAAGGTGAAGCGTTAATGGCTGGGCATTTG
TTGGAAGTGTGTGCTTTTCTCAGCGGGGAAGAGGAGCTACTCAGTTGCTCCGATATCGCACTGGCTCCGCAGTCAGAAGA
AGATGCACTCGACCTGAAGGATATCATCGGTCAGGAGCAGGCTAAACGCGCGTTGGAAATCGCGGCGGCTGGCGGTCACA
ATCTGCTATTGCTGGGGCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCCGATTAGGCAATCTGATGCCGCCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTCATCAACATTGATGCCACCATGACGCGCTGGCGTGCCAGACC
GTTCAGAGCGCCTCACCACAGTTCTTCTATGGCCGCGCTCGTAGGGGGAGGATCGTTGCCAAAACCCGGAGAAATCTCAC
TTGCTCACAACGGCGTGCTGTTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTTCTGGATTCTCTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGGACGCGCGCCAAAGTGTGCTACCCGGCACGCGTGCAGCTCGTCGCTGCAATGAA
TCCCAGCCCATCAGGCCACTATCAAGGCATCCATAACCGCTTACCCGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCGATCGAAGTTCCTTTGCTACCACCAGGGGTTTTATCTCAGCAACGTCAT
CAGGGAGAAAGCAGCGCAACAATTCGCGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTGCTCACCTCACGAGAAATAGAACAACACTGTGCGTTAGAAGCGCCTGATGCGGCTTATCTGGAAGAAGTGATGA
ACAAACTCGGCTTATCCGTACGCGCCTGGCACAGGATATTGAAAGTCGCACGCACAATCGCTGACCTCGGCGATCGGAAC
AACATAGAGAGAAAGCATATTGCCGAAGCACTGAGCTATCGCAGTATGGATCGATTGCTCATCCAGCTCCACAGAAGTCT
TGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C6DHH5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

63.834

99.606

0.636
  comM Vibrio cholerae strain A1552

63.817

99.016

0.632
  comM Glaesserella parasuis strain SC1401

63.116

99.803

0.63
  comM Vibrio campbellii strain DS40M4

62.648

99.606

0.624
  comM Legionella pneumophila str. Paris

50.299

98.622

0.496
  comM Legionella pneumophila strain ERS1305867

50.299

98.622

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.535

99.803

0.474