Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L0Y23_RS03850 Genome accession   NZ_CP090590
Coordinates   856053..856583 (-) Length   176 a.a.
NCBI ID   WP_256542870.1    Uniprot ID   -
Organism   Pectobacterium aroidearum strain QJ315     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 851053..861583
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y23_RS03820 (L0Y23_03820) - 851102..852520 (-) 1419 WP_256542867.1 PLP-dependent aminotransferase family protein -
  L0Y23_RS03825 (L0Y23_03825) - 852612..853049 (+) 438 WP_256542868.1 GNAT family N-acetyltransferase -
  L0Y23_RS03830 (L0Y23_03830) - 853185..853616 (+) 432 WP_256542869.1 carboxymuconolactone decarboxylase family protein -
  L0Y23_RS03835 (L0Y23_03835) - 853703..854317 (+) 615 WP_205947600.1 hypothetical protein -
  L0Y23_RS03840 (L0Y23_03840) - 854377..854967 (-) 591 WP_181847157.1 hypothetical protein -
  L0Y23_RS03845 (L0Y23_03845) - 855028..855486 (-) 459 WP_180778593.1 GNAT family N-acetyltransferase -
  L0Y23_RS03850 (L0Y23_03850) ssb 856053..856583 (-) 531 WP_256542870.1 single-stranded DNA-binding protein SSB1 Machinery gene
  L0Y23_RS03855 (L0Y23_03855) uvrA 856828..859662 (+) 2835 WP_180778596.1 excinuclease ABC subunit UvrA -
  L0Y23_RS03860 (L0Y23_03860) - 859679..860098 (+) 420 WP_256542871.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  L0Y23_RS03865 (L0Y23_03865) - 860480..861337 (+) 858 WP_256542872.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18829.82 Da        Isoelectric Point: 5.2456

>NTDB_id=643694 L0Y23_RS03850 WP_256542870.1 856053..856583(-) (ssb) [Pectobacterium aroidearum strain QJ315]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGTLQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQAQQRPAQNSAP
AQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=643694 L0Y23_RS03850 WP_256542870.1 856053..856583(-) (ssb) [Pectobacterium aroidearum strain QJ315]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACACTGGCAACTTCCGAATCCTGGCGTGATAAACAGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGCGTGGTGCTGTTCGGCAAACTGGCTGAAGTCGCGGGCGAATATCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCACACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGTTAGGCGGACGTCAGGGCGGCGGCGCACCAGCAGGTGGCGGCCAGCAGCAAGGCGGTTGGGGAC
AACCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCACAAGCTCAGCAGCGCCCGGCACAGAACAGTGCTCCA
GCGCAAAGCAACGAACCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.727

100

0.773
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.608
  ssb Neisseria meningitidis MC58

46.893

100

0.472
  ssb Neisseria gonorrhoeae MS11

47.159

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.723

100

0.369