Detailed information NTG0643642

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: L0Y25_RS01305
• Genome accession: NZ_CP090588
• Coordinates: 283069..284595 (-)
• Length: 508 a.a.
• NCBI ID: WP_015842126.1
• Uniprot ID: C6DHH5
• Organism: Pectobacterium aroidearum strain AK042
• Function: require for natural transformation (predicted from homology) Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	281824..282999	283069..284595	flank	70

Gene organization within MGE regions

Location: 281824..284595

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0Y25_RS01300 (L0Y25_01300)	-	281824..282999 (+)	1176	WP_256553495.1	IS4 family transposase	-
L0Y25_RS01305 (L0Y25_01305)	comM	283069..284595 (-)	1527	WP_015842126.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene

Sequence

Protein

• Length: 508 a.a.
• Molecular weight: 55425.94 Da
• Isoelectric Point: 6.6928

>NTDB_id=643642 L0Y25_RS01305 WP_015842126.1 283069..284595(-) (comM) [Pectobacterium aroidearum strain AK042]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LEVCAFLSGEEELLSCSDIALAPQSEEDALDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMLASRLGNLMPPLS
DEEALESAAINSLINIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQRH
QGESSATIRERVLIARQIQLKRANKINALLTSREIEQHCALEAPDAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRN
NIERKHIAEALSYRSMDRLLIQLHRSLE

Nucleotide

• Length: 1527 bp

>NTDB_id=643642 L0Y25_RS01305 WP_015842126.1 283069..284595(-) (comM) [Pectobacterium aroidearum strain AK042]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGCGTACAAGCGCCGGACGTTTATATCGAAGTTCACATCAGCAG
TGGGCTACCGGCCTTAACGCTAGTTGGCTTACCAGAAACTACCGTTAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCCAAGCGCATCACGGTCAACCTTGCTCCCGCAGACCTGCCAAAAGAAGGGGGGCGC
TACGACCTGCCGATTGCTCTGGCGATTCTGGCGGCATCAGAACAAATCGATGGGGAAAAGCTAAGCCGCTACGAGTTTCT
TGGGGAATTAGGCCTGTCTGGCACGCTACGTGGCGTCAATGGCGCAATTCCCGCCGCACTGGAAGCCATAAAATCCGGCC
GCCAGCTAATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAGGGTGAAGCGTTAATGGCTGGGCATTTG
TTGGAAGTGTGTGCTTTTCTCAGCGGGGAAGAGGAGCTACTCAGTTGCTCCGATATCGCACTGGCCCCGCAGTCAGAAGA
AGATGCACTCGACCTGAAGGATATCATCGGTCAGGAGCAGGCTAAACGCGCGTTGGAAATCGCGGCGGCTGGCGGTCACA
ATCTGCTATTGCTGGGGCCGCCGGGAACAGGGAAAACCATGCTGGCGAGCCGATTAGGCAATCTGATGCCGCCATTAAGC
GATGAAGAAGCGCTGGAAAGCGCCGCCATCAACAGCCTCATCAACATTGATGCCACCATGACGCGCTGGCGTGCCAGACC
GTTCAGAGCGCCTCACCATAGTTCTTCTATGGCCGCACTCGTGGGGGGAGGATCGTTGCCAAAACCCGGAGAAATCTCGC
TTGCTCACAACGGCGTGCTGTTTCTGGATGAATTACCGGAGTTTGAGCGACGCGTTCTGGATTCTCTACGAGAGCCTCTG
GAGTCCGGTGAAATTATCATTTCCCGGACGCGCGCCAAAGTGTGCTACCCGGCACGCGTGCAGCTCGTCGCTGCAATGAA
TCCCAGCCCATCAGGCCACTATCAAGGCATCCATAACCGCTTACCCGCACAACAAATACTGCGCTATCTCAGCAAACTTT
CCGGTCCCTTTTTGGATCGCTTTGACCTTTCGATCGAAGTTCCTTTGCTACCACCAGGGGTTTTATCTCAGCAACGTCAT
CAGGGAGAGAGCAGCGCAACAATTCGCGAGCGCGTGCTGATCGCACGGCAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTGCTCACCTCACGAGAAATAGAACAACACTGTGCGTTAGAAGCGCCTGATGCGGCTTATCTGGAAGAAGTGATGA
ACAAACTCGGCTTATCCGTACGCGCCTGGCACAGGATATTGAAAGTCGCACGCACAATCGCTGACCTCGGCGATCGGAAC
AACATAGAGAGAAAGCATATTGCCGAAGCACTGAGCTATCGCAGTATGGATCGATTGCTCATCCAGCTCCACAGAAGTCT
TGAATAG

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (191-390)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (402-494)

3D structure

• AlphaFold DB: C6DHH5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Haemophilus influenzae Rd KW20	63.834	99.606	0.636
comM	Vibrio cholerae strain A1552	63.817	99.016	0.632
comM	Glaesserella parasuis strain SC1401	63.116	99.803	0.63
comM	Vibrio campbellii strain DS40M4	62.648	99.606	0.624
comM	Legionella pneumophila str. Paris	50.299	98.622	0.496
comM	Legionella pneumophila strain ERS1305867	50.299	98.622	0.496
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	47.535	99.803	0.474