Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L0Y26_RS04045 Genome accession   NZ_CP090587
Coordinates   894183..894713 (-) Length   176 a.a.
NCBI ID   WP_180778595.1    Uniprot ID   -
Organism   Pectobacterium aroidearum strain AK049     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 889183..899713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0Y26_RS04015 (L0Y26_04015) - 890653..891090 (+) 438 WP_256554329.1 GNAT family N-acetyltransferase -
  L0Y26_RS04020 (L0Y26_04020) - 891225..891656 (+) 432 WP_181845941.1 carboxymuconolactone decarboxylase family protein -
  L0Y26_RS04025 (L0Y26_04025) - 891743..892357 (+) 615 WP_256554330.1 hypothetical protein -
  L0Y26_RS04030 (L0Y26_04030) - 892418..893008 (-) 591 WP_180778592.1 hypothetical protein -
  L0Y26_RS04035 (L0Y26_04035) - 893069..893527 (-) 459 WP_180778593.1 GNAT family N-acetyltransferase -
  L0Y26_RS04040 (L0Y26_04040) - 893716..893934 (-) 219 WP_228483946.1 hypothetical protein -
  L0Y26_RS04045 (L0Y26_04045) ssb 894183..894713 (-) 531 WP_180778595.1 single-stranded DNA-binding protein SSB1 Machinery gene
  L0Y26_RS04050 (L0Y26_04050) uvrA 894966..897800 (+) 2835 WP_180778596.1 excinuclease ABC subunit UvrA -
  L0Y26_RS04055 (L0Y26_04055) - 897817..898236 (+) 420 WP_256542871.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  L0Y26_RS04060 (L0Y26_04060) - 898618..899475 (+) 858 WP_256554333.1 hypothetical protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18799.79 Da        Isoelectric Point: 5.2456

>NTDB_id=643622 L0Y26_RS04045 WP_180778595.1 894183..894713(-) (ssb) [Pectobacterium aroidearum strain AK049]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWADQAGVERYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQAQQRPAQNSAP
AQSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=643622 L0Y26_RS04045 WP_180778595.1 894183..894713(-) (ssb) [Pectobacterium aroidearum strain AK049]
ATGGCCAGCAGAGGCGTTAATAAAGTGATTCTTGTCGGGAATCTGGGTCAAGACCCGGAAGTCCGCTATATGCCGAATGG
TGGTGCAGTTGCCAACATCACACTGGCAACTTCCGAATCCTGGCGTGATAAACAGACCGGCGAACAGAAAGAGAAGACCG
AGTGGCACCGTGTGGTGCTGTTCGGCAAACTGGCTGAAGTCGCGGGCGAATATCTGCGCAAAGGCTCTCAGGTTTACATC
GAAGGCGCACTGCAAACCCGTAAATGGGCCGATCAGGCTGGCGTAGAGCGCTACACCACCGAAGTCGTCGTTAACGTCGG
CGGCACCATGCAGATGTTAGGCGGACGTCAGGGCGGCGGCGCACCAGCAGGTGGCGGCCAGCAGCAAGGCGGTTGGGGAC
AACCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCGCACAAGCTCAGCAGCGCCCGGCACAGAACAGCGCTCCA
GCGCAAAGCAACGAACCGCCAATGGATTTCGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

72.727

100

0.773
  ssb Glaesserella parasuis strain SC1401

57.838

100

0.608
  ssb Neisseria meningitidis MC58

46.893

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.893

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.723

100

0.369