Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   LOD78_RS00395 Genome accession   NZ_CP090522
Coordinates   67759..68661 (+) Length   300 a.a.
NCBI ID   WP_171989016.1    Uniprot ID   -
Organism   Streptococcus parasuis strain SS17     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 62759..73661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOD78_RS00365 (LOD78_00360) - 63047..63793 (-) 747 WP_171989021.1 amino acid ABC transporter ATP-binding protein -
  LOD78_RS00370 (LOD78_00365) - 63798..64475 (-) 678 WP_171989020.1 amino acid ABC transporter permease -
  LOD78_RS00375 (LOD78_00370) - 64456..65115 (-) 660 WP_274505914.1 amino acid ABC transporter permease -
  LOD78_RS00380 (LOD78_00375) ruvB 65243..66241 (+) 999 WP_274505492.1 Holliday junction branch migration DNA helicase RuvB -
  LOD78_RS00385 (LOD78_00380) - 66241..66987 (+) 747 WP_239604411.1 GNAT family N-acetyltransferase -
  LOD78_RS00390 (LOD78_00385) - 66989..67603 (+) 615 WP_171989017.1 HAD-IA family hydrolase -
  LOD78_RS00395 (LOD78_00390) comR 67759..68661 (+) 903 WP_171989016.1 transcriptional regulator Regulator
  LOD78_RS00400 (LOD78_00395) - 68869..70089 (+) 1221 WP_274505493.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  LOD78_RS00405 (LOD78_00400) - 70273..71793 (+) 1521 WP_274505494.1 quinol oxidase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 35894.81 Da        Isoelectric Point: 4.6012

>NTDB_id=643158 LOD78_RS00395 WP_171989016.1 67759..68661(+) (comR) [Streptococcus parasuis strain SS17]
MNDKEFGQRVRYLREKLAITREEFCEDELELSVRQLSRIEAGQCKPTFSKIGFIASRLNMGLYELMPDYVQLPERYSRLK
YEVLRTPTYGDQFLVEQRDQMLTIIYDEYYDELPEEEKIAIDAFQSTIDVFETRSNQFGKEILDDYFEQVHRKEKYSIND
LLIIRLYLEHIRDRDTDATIYHYFSSLVTHLPNQQEVMDSKELFILRDVILISIGILGDREDYEKIPSLFDALDKIMVLT
QDFQKKPILNLLKWKYELHVNKNRDAAQSYFEEATLFAKLIGNDYLVHKIKEDWEEDSRL

Nucleotide


Download         Length: 903 bp        

>NTDB_id=643158 LOD78_RS00395 WP_171989016.1 67759..68661(+) (comR) [Streptococcus parasuis strain SS17]
GTGAACGATAAGGAATTTGGGCAACGTGTGAGATATTTACGGGAGAAATTAGCAATTACGCGTGAAGAATTCTGTGAAGA
TGAACTAGAATTATCTGTTCGTCAATTGAGTCGTATAGAAGCGGGACAATGCAAACCAACTTTTTCAAAGATAGGTTTTA
TAGCAAGCAGGTTGAATATGGGTTTATATGAGCTTATGCCGGACTATGTCCAACTTCCGGAACGCTATTCGCGTCTAAAA
TATGAGGTATTACGAACTCCTACCTATGGAGACCAATTTTTGGTAGAACAACGCGATCAAATGTTGACAATCATTTATGA
TGAATATTACGATGAGCTCCCAGAAGAAGAAAAAATAGCTATTGATGCTTTTCAGTCGACAATTGATGTATTTGAAACAC
GGTCTAATCAATTTGGCAAAGAGATTTTGGACGATTATTTTGAACAAGTTCATCGTAAAGAAAAGTATTCGATAAATGAC
TTGTTAATCATTCGACTATACCTTGAGCATATTAGAGATAGGGACACTGACGCAACAATCTATCACTATTTTTCCTCACT
TGTTACCCACCTGCCTAATCAACAGGAGGTAATGGATTCAAAAGAGTTATTTATTCTAAGGGATGTTATATTAATCTCAA
TAGGGATTTTAGGGGATCGAGAAGACTATGAGAAAATCCCGTCTCTTTTTGATGCTTTAGATAAAATAATGGTTTTAACT
CAAGATTTTCAAAAGAAACCTATTTTAAACTTATTGAAGTGGAAATACGAGCTCCACGTTAATAAGAACCGAGATGCCGC
ACAGAGTTACTTTGAAGAAGCTACCCTTTTTGCGAAGCTAATTGGAAATGATTATCTAGTTCACAAAATTAAAGAAGACT
GGGAAGAGGATTCACGACTTTAG

Domains

Predicted by InterproScan.

ComR tetratricopeptide (ComR_TPR)

(73-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus suis P1/7

62.207

99.667

0.62
  comR Streptococcus suis 05ZYH33

62.207

99.667

0.62
  comR Streptococcus suis D9

56.811

100

0.57
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

41.869

96.333

0.403
  comR Streptococcus mutans UA159

40.134

99.667

0.4
  comR Streptococcus pyogenes MGAS8232

39.13

99.667

0.39