Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IHC88_RS15050 Genome accession   NZ_CP090498
Coordinates   3257450..3258982 (-) Length   510 a.a.
NCBI ID   WP_106223518.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain CSP DAM2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3252450..3263982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHC88_RS15020 (IHC88_15020) - 3252456..3253130 (-) 675 WP_065171008.1 FadR/GntR family transcriptional regulator -
  IHC88_RS15025 (IHC88_15025) - 3253511..3253684 (+) 174 WP_005302173.1 hypothetical protein -
  IHC88_RS15030 (IHC88_15030) - 3253860..3254126 (+) 267 WP_005302176.1 YihD family protein -
  IHC88_RS15035 (IHC88_15035) ccoG 3254316..3255653 (+) 1338 WP_086957398.1 cytochrome c oxidase accessory protein CcoG -
  IHC88_RS15040 (IHC88_15040) - 3255696..3256685 (+) 990 WP_005302181.1 serine/threonine protein kinase -
  IHC88_RS15045 (IHC88_15045) - 3256775..3257374 (+) 600 WP_370469096.1 thiol:disulfide interchange protein DsbA/DsbL -
  IHC88_RS15050 (IHC88_15050) comM 3257450..3258982 (-) 1533 WP_106223518.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IHC88_RS15055 (IHC88_15055) ilvG 3259522..3261168 (+) 1647 WP_237033243.1 acetolactate synthase 2 catalytic subunit -
  IHC88_RS15060 (IHC88_15060) ilvM 3261171..3261428 (+) 258 WP_036764608.1 acetolactate synthase 2 small subunit -
  IHC88_RS15065 (IHC88_15065) - 3261468..3262397 (+) 930 WP_106261248.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55106.43 Da        Isoelectric Point: 8.2787

>NTDB_id=642957 IHC88_RS15050 WP_106223518.1 3257450..3258982(-) (comM) [Photobacterium damselae subsp. damselae strain CSP DAM2]
MSLAIVHSRACVGVQAPAVTVEVHLSNGMPSFTLVGLPETTVKEAKDRVRSAIFNANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPAESLHKYEFLGELALSGQLRPVKGALPAALAALKAKRCLIVPDRNGDQVALVGEKQHKSAPDL
IQVCAHLLGQQSLSLRFQTKPDDDSLDLTQGRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPP
MSHDEALETAAVASLTQQSIHQGNWLQRPLRAPHHSSSMAALVGGGSIPRPGEISLAHNGILFLDEMPEFERKVLDSLRE
PLESGEIVISRATSKATFPANFQLIGALNPSPTGFYEGAQTRTNPQVILRYLSKLSGPLLDRFDMSIEIPALPKGTLAQG
GERGESTPVIKARVNQARTLMDLRAGKVNARLSTRELDKHCALAREDAEFLENALHQLGLSIRAYHRIIKVARTIADLSN
CEQIERAHLAEALGYRAMDRLLKQLTAQAI

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=642957 IHC88_RS15050 WP_106223518.1 3257450..3258982(-) (comM) [Photobacterium damselae subsp. damselae strain CSP DAM2]
ATGTCATTGGCCATTGTGCATAGCCGGGCTTGCGTTGGGGTACAAGCTCCAGCAGTCACTGTTGAAGTTCATTTAAGTAA
TGGAATGCCCAGTTTTACTCTGGTGGGTTTACCTGAGACAACGGTAAAAGAGGCCAAAGATCGGGTTCGAAGTGCCATTT
TTAATGCCAATTTTGAGTTTCCCTCTCGGCGAATTACCGTCAATTTAGCGCCCGCTGATTTGCCTAAAGAAGGGGGGCGA
TTTGACTTACCCATCGCGCTTGGAATTTTAGCTGCTTCCGGACAAATACCCGCAGAATCGCTGCATAAATATGAATTTTT
AGGGGAGTTGGCCTTATCGGGGCAATTGCGTCCGGTAAAGGGGGCACTGCCTGCTGCTCTTGCTGCATTAAAGGCAAAAA
GATGTTTGATTGTCCCTGATCGTAATGGCGATCAAGTGGCATTAGTAGGTGAAAAACAACATAAGTCAGCGCCTGATTTG
ATCCAAGTTTGCGCTCACCTATTAGGACAGCAAAGTTTATCTTTACGCTTTCAAACAAAACCCGATGATGATTCGTTAGA
TCTGACTCAGGGGCGAGATATGCAAGATATTATTGGTCAGCAGCAAGGTAAGCGGGCATTGGAAATTGCAGCTGCTGGTG
GCCATAATCTTCTATTTCTTGGGCCGCCAGGAACGGGAAAAACCATGTTAGCCTCTCGGTTATGTGATTTATTACCTCCC
ATGAGCCATGATGAGGCGTTAGAAACTGCAGCTGTTGCCTCGCTGACTCAGCAGAGCATTCATCAAGGCAATTGGTTACA
ACGACCGCTACGTGCACCTCATCATTCAAGTTCTATGGCTGCCTTAGTTGGAGGGGGGTCAATTCCAAGGCCAGGAGAGA
TCTCGTTGGCGCATAACGGCATTCTTTTTTTAGATGAAATGCCCGAATTTGAGCGTAAGGTTTTGGACTCATTACGTGAA
CCTTTAGAGTCGGGAGAGATTGTGATTTCTCGGGCAACCAGTAAAGCAACCTTTCCGGCAAATTTTCAATTGATTGGAGC
GCTAAATCCGAGTCCAACAGGATTTTATGAAGGCGCACAAACTCGAACTAATCCTCAAGTTATTTTGCGCTATCTCAGTA
AACTCTCTGGCCCGCTGCTTGATAGGTTTGATATGTCGATTGAGATCCCTGCTCTGCCTAAAGGTACTTTAGCTCAAGGT
GGCGAGCGCGGTGAGAGCACTCCTGTGATTAAAGCGCGAGTTAATCAGGCGCGAACCTTAATGGATCTGCGAGCAGGAAA
AGTGAATGCTCGACTCTCTACTCGGGAGTTAGATAAACATTGCGCTCTGGCTCGAGAAGATGCGGAGTTTCTTGAAAATG
CACTGCATCAGTTGGGGCTATCGATTCGTGCGTACCACCGCATTATTAAGGTGGCACGAACCATTGCCGATTTAAGTAAT
TGTGAGCAGATAGAGCGAGCGCATTTAGCTGAAGCATTAGGATATCGAGCAATGGATCGGTTATTGAAGCAGTTAACGGC
TCAAGCGATATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

76.863

100

0.769
  comM Vibrio cholerae strain A1552

76.471

100

0.765
  comM Glaesserella parasuis strain SC1401

63.333

100

0.633
  comM Haemophilus influenzae Rd KW20

62.722

99.412

0.624
  comM Legionella pneumophila str. Paris

49.699

97.843

0.486
  comM Legionella pneumophila strain ERS1305867

49.699

97.843

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

99.216

0.427