Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   IHC90_RS14705 Genome accession   NZ_CP090493
Coordinates   3197539..3199071 (-) Length   510 a.a.
NCBI ID   WP_237034954.1    Uniprot ID   -
Organism   Photobacterium damselae subsp. damselae strain AS-15-3942-7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3192539..3204071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHC90_RS14675 (IHC90_14675) - 3192558..3193232 (-) 675 WP_065171008.1 FadR/GntR family transcriptional regulator -
  IHC90_RS14680 (IHC90_14680) - 3193613..3193786 (+) 174 WP_237034952.1 hypothetical protein -
  IHC90_RS14685 (IHC90_14685) - 3193962..3194228 (+) 267 WP_005302176.1 YihD family protein -
  IHC90_RS14690 (IHC90_14690) ccoG 3194417..3195754 (+) 1338 WP_331254248.1 cytochrome c oxidase accessory protein CcoG -
  IHC90_RS14695 (IHC90_14695) - 3195797..3196786 (+) 990 WP_005302181.1 serine/threonine protein kinase -
  IHC90_RS14700 (IHC90_14700) - 3196876..3197475 (+) 600 WP_414477833.1 thiol:disulfide interchange protein DsbA/DsbL -
  IHC90_RS14705 (IHC90_14705) comM 3197539..3199071 (-) 1533 WP_237034954.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  IHC90_RS14710 (IHC90_14710) ilvG 3199611..3201257 (+) 1647 WP_237034955.1 acetolactate synthase 2 catalytic subunit -
  IHC90_RS14715 (IHC90_14715) ilvM 3201260..3201517 (+) 258 WP_036764608.1 acetolactate synthase 2 small subunit -
  IHC90_RS14720 (IHC90_14720) - 3201557..3202486 (+) 930 WP_237034956.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 510 a.a.        Molecular weight: 55119.42 Da        Isoelectric Point: 8.2823

>NTDB_id=642887 IHC90_RS14705 WP_237034954.1 3197539..3199071(-) (comM) [Photobacterium damselae subsp. damselae strain AS-15-3942-7]
MSLAIVHSRACVGVQAPAVTVEVHLSNGMPSFTLVGLPETTVKEAKDRVRSAIFNANFEFPSRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIPAESLHKYEFLGELALSGQLRPVKGALPAALAALKAKRCLIVPDRNGDQVALVGEKQHKSAPDL
IQVCAHLLGQHSLSLRFQTKTDDDSLDLTQGRDMQDIIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPP
MSHDEALETAAVASLTQQSIHQGNWLQRPLRAPHHSSSMAALVGGGSIPRPGEISLAHNGILFLDEMPEFERKVLDSLRE
PLESGEIVISRATSKATFPANFQLIGALNPSPTGFYEGAQTRTNPQVILRYLSKLSGPLLDRFDMSIEIPALPKGTLAQG
GERGESTPVIKARVNQARTLMDLRAGKVNARLSTRELDKHCALAREDAEFLENALHQLGLSIRAYHRIIKVARTIADLSN
CEQIERAHLAEALGYRAMDRLLKQLTAQAI

Nucleotide


Download         Length: 1533 bp        

>NTDB_id=642887 IHC90_RS14705 WP_237034954.1 3197539..3199071(-) (comM) [Photobacterium damselae subsp. damselae strain AS-15-3942-7]
ATGTCATTGGCCATTGTGCATAGCCGGGCTTGCGTTGGGGTACAAGCTCCAGCGGTCACTGTTGAAGTTCATTTAAGTAA
TGGAATGCCCAGTTTTACTCTGGTGGGTTTACCTGAGACAACGGTAAAAGAGGCCAAAGATCGGGTTCGAAGTGCCATTT
TTAATGCCAATTTTGAGTTTCCCTCGCGGCGAATTACCGTCAATTTAGCGCCCGCTGATTTGCCTAAAGAAGGGGGCCGA
TTTGACTTACCCATCGCGCTTGGAATTTTAGCGGCTTCCGGACAAATACCCGCAGAATCGCTGCATAAATATGAATTTTT
AGGGGAGTTGGCCTTATCGGGGCAATTGCGTCCGGTAAAGGGGGCGCTGCCTGCTGCTCTTGCTGCATTAAAGGCGAAAA
GGTGCTTGATTGTTCCTGATCGTAATGGCGATCAAGTGGCATTAGTAGGCGAAAAACAACATAAGTCAGCGCCTGATTTG
ATCCAAGTTTGCGCCCACCTATTAGGACAGCACAGTTTATCTTTACGCTTTCAAACAAAAACCGATGATGATTCGTTAGA
TCTGACTCAGGGGCGAGATATGCAAGATATTATTGGTCAGCAGCAAGGTAAGCGGGCATTGGAAATTGCAGCTGCTGGTG
GCCATAATCTTCTATTTCTTGGGCCGCCAGGAACGGGAAAAACCATGTTAGCCTCTCGGTTATGTGATTTATTACCTCCC
ATGAGCCATGATGAGGCGTTAGAAACTGCAGCTGTTGCCTCGCTGACTCAGCAGAGCATTCATCAAGGCAATTGGTTACA
ACGACCGCTACGTGCACCTCATCATTCAAGTTCTATGGCTGCCTTAGTTGGAGGAGGTTCAATTCCAAGGCCAGGAGAGA
TCTCTTTGGCGCATAACGGCATTCTTTTTTTAGATGAAATGCCCGAATTTGAGCGTAAGGTTTTGGACTCATTACGTGAA
CCTTTAGAGTCGGGAGAGATTGTGATTTCTCGGGCAACCAGTAAAGCAACCTTTCCAGCAAACTTTCAATTGATTGGAGC
GCTAAATCCGAGTCCAACAGGATTTTATGAAGGCGCACAAACTCGAACTAATCCTCAAGTTATTTTGCGCTATCTCAGTA
AACTATCTGGCCCGCTGCTTGATAGGTTTGATATGTCGATTGAGATCCCTGCTCTGCCTAAAGGTACTTTAGCTCAAGGT
GGCGAGCGCGGTGAGAGCACTCCTGTGATTAAAGCACGAGTTAATCAGGCGCGAACCTTAATGGATCTGCGAGCAGGAAA
AGTAAATGCTCGACTCTCTACTCGGGAGTTAGATAAACATTGCGCTCTGGCTCGAGAAGATGCGGAGTTTCTTGAAAATG
CACTGCATCAGTTGGGGCTATCGATTCGTGCGTACCACCGCATTATTAAGGTGGCACGAACCATTGCCGATTTAAGTAAT
TGTGAGCAGATAGAGCGAGCGCATTTAGCTGAAGCATTAGGATATCGAGCAATGGATCGGTTATTGAAGCAATTAACGGC
TCAAGCGATATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

76.667

100

0.767
  comM Vibrio cholerae strain A1552

76.078

100

0.761
  comM Glaesserella parasuis strain SC1401

63.333

100

0.633
  comM Haemophilus influenzae Rd KW20

62.722

99.412

0.624
  comM Legionella pneumophila str. Paris

49.499

97.843

0.484
  comM Legionella pneumophila strain ERS1305867

49.499

97.843

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.083

99.216

0.427