Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   X969_RS24580 Genome accession   NC_023075
Coordinates   5380722..5382212 (+) Length   496 a.a.
NCBI ID   WP_024087897.1    Uniprot ID   V9V727
Organism   Pseudomonas monteilii SB3078     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5375722..5387212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  X969_RS24550 (X969_25125) - 5376184..5376879 (+) 696 WP_013974747.1 HAD family hydrolase -
  X969_RS24555 (X969_25130) sutA 5377060..5377389 (-) 330 WP_013974748.1 transcriptional regulator SutA -
  X969_RS24560 (X969_25135) - 5377820..5379151 (-) 1332 WP_015272254.1 ammonium transporter -
  X969_RS24565 (X969_25140) glnK 5379198..5379536 (-) 339 WP_002555808.1 P-II family nitrogen regulator -
  X969_RS24570 (X969_25145) - 5379939..5380205 (+) 267 WP_015272255.1 accessory factor UbiK family protein -
  X969_RS24575 (X969_25150) - 5380206..5380559 (+) 354 WP_023662910.1 gamma-glutamylcyclotransferase family protein -
  X969_RS24580 (X969_25155) comM 5380722..5382212 (+) 1491 WP_024087897.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  X969_RS24585 (X969_25160) - 5382435..5382803 (-) 369 WP_023662911.1 response regulator transcription factor -
  X969_RS24590 (X969_25165) - 5382800..5383792 (-) 993 WP_013974754.1 response regulator -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 52782.49 Da        Isoelectric Point: 7.5221

>NTDB_id=64253 X969_RS24580 WP_024087897.1 5380722..5382212(+) (comM) [Pseudomonas monteilii SB3078]
MSLALVHSRAQVGVQAPAVSVETHLANGLPHLTLVGLPETTVKESKDRVRSAIVNSGLNYPQRRITQNLAPADLPKDGGR
YDLAIALGILAADGQVPTATLAEVECLGELALSGKLRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
LELVAHLNGQVPLPPYAANGLILQQRPYPDLSEVQGQLAAKRALLLAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGHTPLSSWPQRPFRHPHHSASGPALVGGSSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPTGRCRCSTEQIARYRNKLSGPLLDRIDLHLTVARESTTLNNQPCG
ETSADVAAKVAEARELQQRRQGCANAFLDLEGLRCHCGLAAADQAWLEGACERLTLSLRAAHRLLKVARTLADLEGNQAI
GRAHLAEALQYRPGSS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=64253 X969_RS24580 WP_024087897.1 5380722..5382212(+) (comM) [Pseudomonas monteilii SB3078]
ATGTCCCTAGCCCTCGTCCACAGCCGCGCCCAGGTGGGCGTGCAGGCACCGGCGGTCAGCGTCGAAACCCACCTGGCCAA
CGGCTTGCCCCATCTCACGCTGGTCGGTCTGCCGGAAACCACGGTCAAAGAGAGCAAGGACCGGGTACGCAGCGCCATCG
TCAACTCCGGTTTGAACTACCCGCAGCGGCGCATCACCCAGAACCTCGCCCCCGCCGACCTGCCCAAGGATGGCGGGCGC
TATGACCTGGCAATTGCCCTGGGTATCCTCGCCGCCGATGGCCAGGTACCAACGGCCACCCTTGCCGAGGTCGAATGCCT
GGGCGAACTGGCGCTGTCTGGCAAGTTGCGCCCGGTGCAGGGCGTGTTGCCCGCAGCACTGGCGGCACGCGAAGCAGGCC
GGGCGCTGGTGGTGCCGCGGGAGAATGCCGAGGAAGCCAGCCTGGCAGGCGGGCTGGTGGTGTATGCGGTGGGGCACCTG
CTGGAACTGGTCGCCCACCTGAACGGCCAGGTGCCATTGCCACCGTATGCCGCCAACGGCCTGATCCTGCAGCAACGCCC
GTACCCGGACCTGAGCGAAGTGCAGGGCCAACTGGCGGCCAAGCGTGCGCTGCTGCTAGCGGCGGCCGGGGCGCACAACC
TTTTGTTCACCGGGCCTCCCGGTACCGGCAAGACCTTGCTTGCCAGCCGCTTGCCGGGGCTGCTGCCACCACTGGACGAG
CACGAAGCACTGGAAGTGGCGGCGATACAGTCGGTCAGCGGCCATACGCCACTGAGCAGCTGGCCGCAGCGGCCCTTCCG
CCATCCGCATCACTCCGCCTCCGGCCCGGCACTGGTCGGCGGCAGCAGCCGGCCGCAACCGGGCGAAATCACCCTCGCCC
ACCATGGCGTGCTGTTTCTGGATGAACTACCTGAGTTCGAGCGTCGCGTGCTGGAAGTGTTGCGCGAACCGCTGGAGTCG
GGCGAGATCGTGATTGCCCGGGCCCGCGACAAGGTGCGCTTCCCGGCCCGTTTCCAGCTGGTGGCGGCAATGAACCCCTG
CCCTTGCGGCTACCTGGGCGACCCCACTGGCCGCTGCCGCTGTAGCACCGAGCAGATCGCGCGGTATCGCAACAAGCTGT
CCGGGCCATTGCTGGACCGTATCGACCTGCACCTGACCGTGGCCCGGGAGAGCACCACGCTGAACAACCAGCCCTGCGGC
GAGACCAGTGCCGATGTGGCGGCCAAGGTAGCCGAGGCACGTGAACTGCAACAGCGGCGGCAAGGGTGTGCGAATGCATT
TCTCGACCTTGAGGGGTTGCGCTGCCATTGTGGGTTGGCGGCGGCGGACCAGGCCTGGTTGGAGGGGGCCTGTGAGCGGC
TGACCCTGTCGTTACGTGCGGCTCACCGGTTACTGAAGGTGGCGCGGACGCTGGCGGATCTGGAAGGTAACCAGGCAATT
GGCCGGGCGCATCTGGCCGAGGCCCTGCAGTACCGGCCGGGGAGCAGTTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V9V727

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

55.4

100

0.558
  comM Vibrio campbellii strain DS40M4

55.556

99.798

0.554
  comM Vibrio cholerae strain A1552

55.152

99.798

0.55
  comM Glaesserella parasuis strain SC1401

53.892

100

0.544
  comM Legionella pneumophila str. Paris

49.194

100

0.492
  comM Legionella pneumophila strain ERS1305867

49.194

100

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.813

100

0.474

Multiple sequence alignment