Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LZ683_RS01020 Genome accession   NZ_CP090445
Coordinates   232964..234502 (+) Length   512 a.a.
NCBI ID   WP_182285299.1    Uniprot ID   -
Organism   Comamonas testosteroni strain X13     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 227964..239502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ683_RS01000 (LZ683_00990) - 228738..230066 (-) 1329 WP_182285296.1 sulfatase-like hydrolase/transferase -
  LZ683_RS01005 (LZ683_00995) - 230180..231172 (-) 993 WP_256496873.1 Bug family tripartite tricarboxylate transporter substrate binding protein -
  LZ683_RS01010 (LZ683_01000) - 231265..232239 (-) 975 WP_182285297.1 tripartite tricarboxylate transporter substrate binding protein -
  LZ683_RS01015 (LZ683_01005) - 232331..232879 (+) 549 WP_182285298.1 MarR family transcriptional regulator -
  LZ683_RS01020 (LZ683_01010) comM 232964..234502 (+) 1539 WP_182285299.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LZ683_RS01025 (LZ683_01015) - 234516..235445 (-) 930 WP_182285300.1 LysR substrate-binding domain-containing protein -
  LZ683_RS01030 (LZ683_01020) - 235555..236736 (+) 1182 WP_342760603.1 YbfB/YjiJ family MFS transporter -
  LZ683_RS01035 (LZ683_01025) - 236771..237835 (+) 1065 WP_275053839.1 nitronate monooxygenase -
  LZ683_RS01040 (LZ683_01030) - 237855..239135 (-) 1281 WP_275053840.1 CaiB/BaiF CoA-transferase family protein -

Sequence

Protein


Download         Length: 512 a.a.        Molecular weight: 54730.71 Da        Isoelectric Point: 7.3502

>NTDB_id=642488 LZ683_RS01020 WP_182285299.1 232964..234502(+) (comM) [Comamonas testosteroni strain X13]
MGLALVQSRALLGLQAPAVTVEVHLANGLPSFTLVGLADVEVKEARERVRAAIVNAGLEFPNNKRITVNLAPADLPKDSG
RFDLPIALGILAASGQIDAQRLADYEFAGELSLTGALRPVRGALATALALQRQQQRVRLVLPPDSALEAAFVPAIEVFGA
VHLLDVVRQFIAHDAAPSEQGDGVEGWQRVHSRPAEASLQSLDLREVRGQMQAKRALEIAAAGAHGVLMIGPPGSGKSML
AQRFAGLLPGMTDEEALEAAAIASLSGRFTPQLWRQRPFAAPHHTASSVALVGGGSPPRPGEISYAHCGALFLDELPEFA
RSALEALREPLETGRITIVRAVQRAEFPARFQLVAAMNPCPCGYWGSRVRACRCSPDQVARYQARISGPLLDRIDLHVEV
AALSPEELLAAPEGESSAAVQQRVSAARDKALLRQGLPNHQLQGVQLDTHLQLEPEALTFAHKAAARLGWSARGTHRALK
VARTIADLADSDAITQAHLAEALQYRRALMQP

Nucleotide


Download         Length: 1539 bp        

>NTDB_id=642488 LZ683_RS01020 WP_182285299.1 232964..234502(+) (comM) [Comamonas testosteroni strain X13]
ATGGGTCTGGCTCTGGTTCAAAGTCGTGCCCTGCTGGGCCTGCAGGCACCGGCCGTCACGGTGGAGGTCCATCTGGCCAA
CGGACTGCCTTCGTTCACGCTGGTGGGCCTGGCGGATGTGGAGGTCAAGGAGGCCCGCGAGCGCGTGCGTGCAGCCATTG
TCAATGCGGGGCTGGAGTTCCCGAACAACAAGCGCATCACGGTCAATCTGGCTCCGGCAGATCTGCCCAAGGACTCAGGC
CGCTTTGACTTGCCGATAGCGCTGGGAATTCTGGCGGCCAGCGGGCAGATCGATGCACAGCGGCTCGCCGATTATGAGTT
TGCAGGAGAGCTGTCCCTGACAGGTGCCCTGCGCCCGGTACGCGGAGCCCTGGCTACGGCGCTGGCCTTGCAGCGTCAGC
AACAGCGCGTGCGGCTGGTGCTGCCGCCAGACAGTGCGCTGGAGGCCGCTTTCGTGCCGGCTATCGAAGTCTTCGGCGCT
GTGCATCTGCTGGATGTGGTCAGGCAGTTCATCGCGCATGACGCCGCCCCGTCGGAGCAGGGCGATGGCGTGGAGGGCTG
GCAGCGGGTGCACTCCAGACCTGCTGAAGCTTCTTTGCAGTCGCTGGATCTGCGGGAGGTGCGCGGCCAGATGCAGGCCA
AGCGTGCTCTTGAAATTGCAGCTGCCGGAGCTCACGGCGTCTTGATGATCGGCCCTCCGGGTTCTGGGAAATCCATGCTG
GCCCAGCGCTTTGCGGGTTTGCTGCCCGGCATGACCGATGAGGAAGCCCTCGAAGCCGCCGCCATTGCCAGCCTCAGCGG
TCGTTTCACGCCGCAGTTGTGGCGTCAGAGGCCGTTTGCCGCTCCCCATCACACGGCCAGCTCCGTCGCGCTGGTCGGCG
GCGGCTCGCCGCCGCGGCCCGGCGAGATTTCATATGCCCATTGCGGGGCGCTTTTTCTCGACGAGCTGCCCGAGTTCGCG
CGCAGTGCCCTGGAGGCCCTGCGCGAGCCGCTGGAGACCGGGCGCATCACCATCGTGCGGGCCGTGCAGAGGGCGGAGTT
TCCGGCTCGTTTCCAACTGGTGGCAGCCATGAACCCCTGCCCCTGCGGCTACTGGGGCTCGCGCGTGAGGGCCTGCCGCT
GCTCCCCCGATCAGGTGGCACGTTATCAGGCACGCATCAGCGGGCCCTTGCTGGACCGTATCGATCTGCATGTGGAGGTG
GCGGCACTGTCGCCCGAGGAGCTTCTGGCTGCGCCCGAAGGGGAGAGCAGCGCTGCCGTGCAGCAACGCGTGAGTGCAGC
CAGGGACAAGGCCTTGCTGCGCCAGGGCCTGCCCAATCATCAGTTGCAGGGGGTGCAGCTCGACACGCATCTGCAGCTGG
AGCCCGAGGCGCTGACCTTTGCGCACAAGGCTGCAGCGCGCCTTGGCTGGTCGGCACGCGGCACGCACCGGGCCTTGAAG
GTGGCGCGAACCATTGCCGATCTGGCGGACTCGGATGCCATCACGCAAGCCCATCTGGCCGAGGCATTGCAATACCGCCG
CGCACTGATGCAGCCGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(414-506)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(203-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

53.033

99.805

0.529
  comM Vibrio campbellii strain DS40M4

50.685

99.805

0.506
  comM Haemophilus influenzae Rd KW20

50.591

99.219

0.502
  comM Glaesserella parasuis strain SC1401

49.902

99.805

0.498
  comM Legionella pneumophila str. Paris

47.692

100

0.484
  comM Legionella pneumophila strain ERS1305867

47.692

100

0.484
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.118

99.609

0.439