Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LY387_RS02260 Genome accession   NZ_CP090438
Coordinates   487886..488425 (+) Length   179 a.a.
NCBI ID   WP_042473381.1    Uniprot ID   A0A090RVR1
Organism   Vibrio maritimus strain BH16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 482886..493425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY387_RS02245 uvrA 482920..485748 (-) 2829 WP_234495173.1 excinuclease ABC subunit UvrA -
  LY387_RS02250 galU 485898..486767 (-) 870 WP_042473378.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LY387_RS02255 qstR 486950..487600 (-) 651 WP_419153433.1 LuxR C-terminal-related transcriptional regulator Regulator
  LY387_RS02260 ssb 487886..488425 (+) 540 WP_042473381.1 single-stranded DNA-binding protein Machinery gene
  LY387_RS02265 csrD 488617..490608 (+) 1992 WP_234495174.1 RNase E specificity factor CsrD -
  LY387_RS02270 bcsG 490703..492325 (-) 1623 WP_234495175.1 cellulose biosynthesis protein BcsG -
  LY387_RS02275 - 492329..492481 (-) 153 WP_234495176.1 hypothetical protein -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19787.01 Da        Isoelectric Point: 5.2358

>NTDB_id=642435 LY387_RS02260 WP_042473381.1 487886..488425(+) (ssb) [Vibrio maritimus strain BH16]
MASRGVNKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQNGQDRYTTEVVVQGFNGVMQMLGGRQGGGAPMQGGMNQGGMQQQAPQQQGWGQPQQPAVQQPAQQKPA
QQQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=642435 LY387_RS02260 WP_042473381.1 487886..488425(+) (ssb) [Vibrio maritimus strain BH16]
ATGGCAAGCCGTGGAGTAAACAAAGTCATTCTAGTGGGTAACTTAGGTAACGACCCAGAAATTCGTTACATGCCAAACGG
CGGTGCCGTGGCGAATATTACAATCGCGACTTCTGAATCGTGGCGTGATAAGGCGACTGGCGAACAGCGCGAAAAAACTG
AGTGGCACCGTGTTGCACTATTCGGCAAGCTGGCAGAAGTGGCTGGCGAGTACTTGAGAAAAGGTTCTCAAGTGTACATC
GAAGGTCAACTACAGACTCGTAAGTGGCAAGACCAAAATGGTCAAGACCGCTACACAACAGAGGTTGTGGTTCAAGGCTT
TAACGGTGTTATGCAGATGCTAGGCGGCCGTCAAGGCGGCGGTGCTCCAATGCAGGGTGGTATGAACCAAGGCGGTATGC
AGCAGCAAGCTCCACAACAACAAGGTTGGGGCCAGCCACAGCAGCCTGCAGTTCAGCAGCCAGCACAGCAAAAACCTGCT
CAACAGCAGCCACAATACAATGAACCACCAATGGATTTCGACGACGACATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A090RVR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.522

100

0.838
  ssb Glaesserella parasuis strain SC1401

58.947

100

0.626
  ssb Neisseria meningitidis MC58

47.253

100

0.48
  ssb Neisseria gonorrhoeae MS11

46.629

99.441

0.464