Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   LY387_RS02255 Genome accession   NZ_CP090438
Coordinates   486950..487600 (-) Length   216 a.a.
NCBI ID   WP_419153433.1    Uniprot ID   -
Organism   Vibrio maritimus strain BH16     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 481950..492600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY387_RS02245 uvrA 482920..485748 (-) 2829 WP_234495173.1 excinuclease ABC subunit UvrA -
  LY387_RS02250 galU 485898..486767 (-) 870 WP_042473378.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LY387_RS02255 qstR 486950..487600 (-) 651 WP_419153433.1 LuxR C-terminal-related transcriptional regulator Regulator
  LY387_RS02260 ssb 487886..488425 (+) 540 WP_042473381.1 single-stranded DNA-binding protein Machinery gene
  LY387_RS02265 csrD 488617..490608 (+) 1992 WP_234495174.1 RNase E specificity factor CsrD -
  LY387_RS02270 bcsG 490703..492325 (-) 1623 WP_234495175.1 cellulose biosynthesis protein BcsG -
  LY387_RS02275 - 492329..492481 (-) 153 WP_234495176.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24717.21 Da        Isoelectric Point: 7.9591

>NTDB_id=642434 LY387_RS02255 WP_419153433.1 486950..487600(-) (qstR) [Vibrio maritimus strain BH16]
MRKNSYKRTIQHVSFGKDPEVTQRVSELSNLCINSIETITPNDLLNVASGPRNRILLFDYEESLDLFKQVLNLPLASKNF
ETILINVPHRLTTEEILKYGHIKGLFYTHEDAGKITYGFGEIINGKNWLPRDVASQLIHHYRYVVSANTSTTVVDLTSRE
IEILRCLQSGASNLEISEDLYITESTVKSHLYQVFRKLSVKNRLQAIAWANQHLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=642434 LY387_RS02255 WP_419153433.1 486950..487600(-) (qstR) [Vibrio maritimus strain BH16]
ATGAGAAAAAATAGCTATAAGCGAACCATACAACACGTCAGTTTTGGGAAAGATCCAGAAGTCACACAGCGCGTAAGTGA
GCTGTCCAATCTATGCATCAACAGTATCGAAACCATTACTCCGAACGACTTGCTCAATGTCGCGTCGGGACCCAGAAATC
GCATCCTTCTTTTTGATTATGAAGAATCGCTAGACCTATTCAAACAAGTGCTAAATCTCCCCCTTGCCAGCAAAAATTTT
GAGACGATTCTCATCAACGTTCCTCACAGGTTAACCACTGAAGAGATTCTCAAATATGGTCACATCAAAGGGCTTTTCTA
CACCCATGAGGATGCAGGTAAGATTACCTATGGGTTTGGCGAGATCATCAATGGAAAAAACTGGTTACCGCGAGACGTGG
CGAGCCAACTTATACACCATTATCGCTATGTCGTTTCAGCGAATACCTCTACCACAGTGGTAGATTTAACCTCACGAGAG
ATAGAAATATTACGCTGCTTGCAATCAGGTGCGAGTAATCTCGAAATCTCAGAAGATTTATACATAACGGAGTCGACGGT
AAAGTCTCATTTGTATCAAGTTTTTAGAAAGCTATCGGTCAAAAACAGGCTCCAAGCTATTGCCTGGGCAAACCAACACT
TGCTGTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

50.459

100

0.509
  qstR Vibrio parahaemolyticus RIMD 2210633

49.074

100

0.491
  qstR Vibrio campbellii strain DS40M4

49.074

100

0.491