Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LY388_RS17680 Genome accession   NZ_CP090387
Coordinates   2708060..2708593 (-) Length   177 a.a.
NCBI ID   WP_000168287.1    Uniprot ID   A0A2A1YRC3
Organism   Vibrio cholerae strain GXFL1-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2703060..2713593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY388_RS17660 (LY388_17660) - 2703515..2703832 (-) 318 WP_000252812.1 MSHA biogenesis protein MshK -
  LY388_RS17665 (LY388_17665) gspM 2703825..2704475 (-) 651 WP_000835144.1 type II secretion system protein GspM -
  LY388_RS17670 (LY388_17670) - 2704472..2705911 (-) 1440 WP_057563366.1 PilN domain-containing protein -
  LY388_RS17675 (LY388_17675) csrD 2705924..2707936 (-) 2013 WP_199358604.1 RNase E specificity factor CsrD -
  LY388_RS17680 (LY388_17680) ssb 2708060..2708593 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  LY388_RS17685 (LY388_17685) qstR 2708885..2709529 (+) 645 WP_234116092.1 LuxR C-terminal-related transcriptional regulator Regulator
  LY388_RS17690 (LY388_17690) galU 2709702..2710574 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LY388_RS17695 (LY388_17695) uvrA 2710730..2713552 (+) 2823 WP_057563367.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19644.85 Da        Isoelectric Point: 5.7626

>NTDB_id=641943 LY388_RS17680 WP_000168287.1 2708060..2708593(-) (ssb) [Vibrio cholerae strain GXFL1-4]
MASRGVNKVILIGNLGQDPEVRYMPSGGAVANITIATSETWRDKATGEQKEKTEWHRVTLYGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYSTEVVVQGYNGIMQMLGGRAQQGGMPAQGGMNAPAQQGSWGQPQQPAKQHQPMQQSAPQQYS
QPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=641943 LY388_RS17680 WP_000168287.1 2708060..2708593(-) (ssb) [Vibrio cholerae strain GXFL1-4]
ATGGCAAGCCGTGGCGTGAACAAAGTAATTTTGATTGGTAACTTAGGCCAAGATCCTGAAGTGCGTTATATGCCAAGCGG
CGGCGCAGTAGCGAATATCACCATCGCGACCTCCGAAACCTGGCGTGATAAAGCCACAGGTGAACAGAAGGAAAAAACCG
AATGGCACCGAGTTACTCTGTATGGAAAATTGGCAGAAGTGGCCGGTGAATATTTGCGCAAAGGTTCTCAAGTTTACATT
GAAGGCCAACTGCAAACGCGTAAGTGGCAAGATCAAAGTGGTCAAGATCGCTACTCAACCGAAGTGGTTGTACAAGGCTA
TAACGGTATCATGCAGATGCTGGGTGGACGTGCACAGCAAGGTGGAATGCCAGCCCAAGGCGGCATGAATGCTCCTGCGC
AGCAAGGAAGTTGGGGACAACCACAACAACCGGCGAAGCAGCATCAGCCTATGCAACAATCTGCGCCTCAACAGTACTCG
CAACCGCAGTATAATGAGCCGCCGATGGATTTTGATGACGACATCCCGTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A1YRC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

99.435

100

0.994
  ssb Glaesserella parasuis strain SC1401

52.198

100

0.537
  ssb Neisseria meningitidis MC58

47.778

100

0.486
  ssb Neisseria gonorrhoeae MS11

47.778

100

0.486