Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   LY388_RS17685 Genome accession   NZ_CP090387
Coordinates   2708885..2709529 (+) Length   214 a.a.
NCBI ID   WP_234116092.1    Uniprot ID   -
Organism   Vibrio cholerae strain GXFL1-4     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2703885..2714529
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY388_RS17670 (LY388_17670) - 2704472..2705911 (-) 1440 WP_057563366.1 PilN domain-containing protein -
  LY388_RS17675 (LY388_17675) csrD 2705924..2707936 (-) 2013 WP_199358604.1 RNase E specificity factor CsrD -
  LY388_RS17680 (LY388_17680) ssb 2708060..2708593 (-) 534 WP_000168287.1 single-stranded DNA-binding protein Machinery gene
  LY388_RS17685 (LY388_17685) qstR 2708885..2709529 (+) 645 WP_234116092.1 LuxR C-terminal-related transcriptional regulator Regulator
  LY388_RS17690 (LY388_17690) galU 2709702..2710574 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LY388_RS17695 (LY388_17695) uvrA 2710730..2713552 (+) 2823 WP_057563367.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24680.47 Da        Isoelectric Point: 9.6461

>NTDB_id=641944 LY388_RS17685 WP_234116092.1 2708885..2709529(+) (qstR) [Vibrio cholerae strain GXFL1-4]
MQRANYARTIYLLTTQPKALHPSIQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQAQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRAKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=641944 LY388_RS17685 WP_234116092.1 2708885..2709529(+) (qstR) [Vibrio cholerae strain GXFL1-4]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCAAAAGCGTTACATCCCAGTATTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATCTTGTTTAATGTCGAGAAACGGTTAAGAACAGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGCTCAAGCCACGGTCGATTTAACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCGAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGTTAAACGTGAAAAATCGAGCCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

99.065

100

0.991
  qstR Vibrio parahaemolyticus RIMD 2210633

52.093

100

0.523
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523