Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LYZ39_RS19630 Genome accession   NZ_CP090381
Coordinates   4282503..4284029 (-) Length   508 a.a.
NCBI ID   WP_171664621.1    Uniprot ID   -
Organism   Achromobacter deleyi strain SMAs-55     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4277503..4289029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LYZ39_RS19605 (LYZ39_19605) - 4277691..4278029 (-) 339 WP_171664618.1 integration host factor subunit alpha -
  LYZ39_RS19610 (LYZ39_19610) pheT 4278033..4280450 (-) 2418 WP_171664619.1 phenylalanine--tRNA ligase subunit beta -
  LYZ39_RS19615 (LYZ39_19615) pheS 4280464..4281486 (-) 1023 WP_171664620.1 phenylalanine--tRNA ligase subunit alpha -
  LYZ39_RS19620 (LYZ39_19620) rplT 4281564..4281923 (-) 360 WP_006218741.1 50S ribosomal protein L20 -
  LYZ39_RS19625 (LYZ39_19625) rpmI 4281941..4282138 (-) 198 WP_006226956.1 50S ribosomal protein L35 -
  LYZ39_RS19630 (LYZ39_19630) comM 4282503..4284029 (-) 1527 WP_171664621.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LYZ39_RS19635 (LYZ39_19635) - 4284154..4284405 (-) 252 WP_054458252.1 accessory factor UbiK family protein -
  LYZ39_RS19640 (LYZ39_19640) - 4285022..4285360 (+) 339 WP_171664622.1 P-II family nitrogen regulator -
  LYZ39_RS19645 (LYZ39_19645) amt 4285389..4286627 (+) 1239 WP_171664623.1 ammonium transporter -
  LYZ39_RS19650 (LYZ39_19650) ptsP 4286723..4288381 (-) 1659 WP_234103073.1 phosphoenolpyruvate--protein phosphotransferase -
  LYZ39_RS19655 (LYZ39_19655) - 4288536..4288805 (-) 270 WP_006387993.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 52759.05 Da        Isoelectric Point: 8.5230

>NTDB_id=641854 LYZ39_RS19630 WP_171664621.1 4282503..4284029(-) (comM) [Achromobacter deleyi strain SMAs-55]
MTLAVLASRALCGMHAHAVRVETHLGAGLPSFNVVGLADTEVRESRERVRAAIINSGFEFPAGRITVNLSPADIPKESGR
FDLPIALGLLLASGQLTASADGVAGQAAPDPALVQLVLAGELSLTGALVPVAAPLVIALGVARDAPDATLILPAGSAEQA
AWVPGLRVLSARSLADVAAHAAGVCLLPNAVPRPWPEAAPVPCLSDVRGQPGARRALEVAAAGGHSLLMVGPPGAGKSML
AARLPGLLPPLERSQALEAAAVAAMAGVPDGLMGQPPFRAPHHSASVAALVGGGGRPRPGEISLAHHGVLFLDEFPEFSR
RTLEALREPLEAGRVVISRALQTVQFPARFQLVAAMNPCPCGWRGHPARACGCTPDQVARYVGKVSGPLLDRIDLHVALP
PSDPECMNGPPGEASEPVRARVMRCRERQQARQGKPNAGLAGAELDRFCVMDGDARSLLLQAMRRLAGSARAMHRALRVA
RTIADLDGEDVLAARHVAQAVQYRRPGV

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=641854 LYZ39_RS19630 WP_171664621.1 4282503..4284029(-) (comM) [Achromobacter deleyi strain SMAs-55]
TTGACGCTTGCCGTTCTAGCCAGCAGGGCCCTCTGCGGCATGCACGCCCATGCGGTTCGCGTCGAGACGCATCTGGGGGC
CGGCCTGCCCAGCTTCAATGTGGTCGGCCTGGCCGATACCGAAGTGAGGGAAAGCCGCGAGCGGGTCAGGGCGGCAATCA
TCAACAGCGGATTCGAGTTTCCGGCCGGCCGCATCACCGTCAATCTTTCGCCCGCCGATATTCCCAAGGAATCGGGCCGG
TTCGACCTGCCCATCGCTTTGGGGCTGTTGCTGGCTTCCGGACAGTTGACCGCTTCCGCCGACGGCGTTGCGGGGCAGGC
CGCGCCCGATCCCGCGCTGGTTCAACTGGTCCTGGCCGGCGAGCTCTCTTTGACTGGAGCCCTGGTGCCCGTCGCCGCGC
CGCTGGTCATCGCGTTGGGCGTTGCCCGGGACGCGCCCGACGCCACGCTGATCCTGCCCGCCGGCAGCGCCGAACAGGCC
GCCTGGGTGCCGGGCTTGCGGGTGTTGTCGGCTCGCAGCCTGGCTGATGTCGCCGCCCATGCGGCCGGCGTCTGCCTGTT
GCCAAACGCGGTGCCCAGGCCCTGGCCCGAGGCGGCGCCGGTTCCCTGCCTGTCGGACGTGCGGGGGCAGCCCGGCGCGC
GGCGGGCCCTGGAAGTGGCGGCGGCGGGCGGCCATAGCCTGCTGATGGTGGGGCCGCCGGGCGCGGGCAAGAGCATGCTT
GCCGCCCGCCTGCCGGGCCTGTTGCCGCCGCTGGAGCGCAGCCAGGCGCTGGAGGCCGCGGCGGTGGCGGCGATGGCCGG
TGTGCCCGATGGGCTGATGGGCCAGCCGCCGTTCCGGGCGCCGCACCATTCGGCCTCCGTGGCGGCCCTGGTGGGCGGGG
GCGGGCGGCCGCGCCCGGGCGAGATCAGCCTGGCGCATCACGGGGTGCTGTTCCTGGATGAATTTCCTGAGTTCAGCCGT
CGCACGCTGGAAGCGCTGCGCGAACCGCTGGAGGCGGGCAGGGTGGTCATCTCGCGGGCTTTGCAGACCGTGCAGTTTCC
GGCGCGGTTCCAACTGGTCGCCGCCATGAATCCCTGCCCCTGCGGCTGGCGCGGCCATCCCGCGCGCGCCTGCGGCTGCA
CGCCCGACCAGGTGGCACGCTATGTCGGCAAGGTCTCCGGCCCCTTGCTGGACCGTATTGATCTGCACGTGGCTCTGCCG
CCATCCGACCCCGAATGCATGAACGGTCCGCCGGGCGAGGCGTCGGAACCCGTCCGGGCGCGTGTAATGCGCTGCCGTGA
ACGTCAGCAGGCGCGGCAGGGCAAGCCCAATGCCGGTCTGGCCGGGGCGGAACTGGATCGGTTCTGCGTCATGGATGGCG
ACGCCCGCTCCCTGCTGCTGCAGGCCATGCGCCGGCTGGCGGGGTCTGCCCGGGCCATGCACCGCGCGCTGCGAGTGGCG
CGCACGATCGCCGATCTTGACGGCGAGGACGTGCTTGCCGCCCGGCATGTCGCCCAGGCGGTGCAGTACCGGCGGCCGGG
AGTATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(204-403)

Subunit ChlI of Mg-chelatase (ChlI)

(21-154)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(412-504)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

48.337

100

0.486
  comM Haemophilus influenzae Rd KW20

46.304

100

0.469
  comM Vibrio campbellii strain DS40M4

46.667

100

0.469
  comM Glaesserella parasuis strain SC1401

44.788

100

0.457
  comM Legionella pneumophila str. Paris

44.423

100

0.455
  comM Legionella pneumophila strain ERS1305867

44.423

100

0.455
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.085

100

0.429