Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LY632_RS13650 Genome accession   NZ_CP090370
Coordinates   2798144..2798656 (-) Length   170 a.a.
NCBI ID   WP_234091664.1    Uniprot ID   -
Organism   Erythrobacter sp. SDW2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2793144..2803656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LY632_RS13615 (LY632_13615) - 2793611..2794012 (-) 402 WP_234091658.1 GFA family protein -
  LY632_RS13620 (LY632_13620) - 2794031..2794438 (-) 408 WP_234091659.1 ACT domain-containing protein -
  LY632_RS13625 (LY632_13625) hslU 2794435..2795736 (-) 1302 WP_234091660.1 ATP-dependent protease ATPase subunit HslU -
  LY632_RS13630 (LY632_13630) hslV 2795831..2796388 (-) 558 WP_305040818.1 ATP-dependent protease subunit HslV -
  LY632_RS13635 (LY632_13635) - 2796443..2796907 (-) 465 WP_234091661.1 outer membrane protein assembly factor BamE -
  LY632_RS13640 (LY632_13640) - 2797104..2797622 (+) 519 WP_234091662.1 ubiquinol-cytochrome C chaperone family protein -
  LY632_RS13645 (LY632_13645) - 2797619..2798143 (+) 525 WP_234091663.1 DUF177 domain-containing protein -
  LY632_RS13650 (LY632_13650) ssb 2798144..2798656 (-) 513 WP_234091664.1 single-stranded DNA-binding protein Machinery gene
  LY632_RS13655 (LY632_13655) - 2798672..2800522 (-) 1851 WP_234091665.1 ferrous iron transporter B -
  LY632_RS13660 (LY632_13660) - 2800530..2800769 (-) 240 WP_234091666.1 FeoA family protein -
  LY632_RS13665 (LY632_13665) - 2800829..2801491 (-) 663 WP_234091667.1 COQ9 family protein -
  LY632_RS13670 (LY632_13670) - 2801496..2802068 (-) 573 WP_234091668.1 ankyrin repeat domain-containing protein -
  LY632_RS13675 (LY632_13675) - 2802199..2802804 (+) 606 WP_234091669.1 SCO family protein -
  LY632_RS13680 (LY632_13680) - 2802792..2803253 (+) 462 WP_234091670.1 YcgN family cysteine cluster protein -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 17869.44 Da        Isoelectric Point: 4.9562

>NTDB_id=641786 LY632_RS13650 WP_234091664.1 2798144..2798656(-) (ssb) [Erythrobacter sp. SDW2]
MAGSLNKVMLIGNLGADPEIRSFQNGGKVANLRIATSETWKDRNTGERQERTEWHSVAIFSEGLVGVVERFLKKGSKVYV
EGQLQTRKWQDQNGQDRYTTEVVLRGMNGTLTMLDGAQGGGGGGYQRSGGGGSGNYSGGDQGGGWNQGGGGSGGSGGGSN
YDDLDDDIPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=641786 LY632_RS13650 WP_234091664.1 2798144..2798656(-) (ssb) [Erythrobacter sp. SDW2]
ATGGCCGGGTCTCTGAACAAAGTCATGCTGATCGGAAACCTGGGTGCCGACCCGGAAATCCGCAGCTTCCAGAACGGCGG
CAAGGTCGCCAACCTGCGCATCGCCACCAGCGAGACGTGGAAGGATCGCAACACCGGCGAGCGGCAGGAGCGGACCGAGT
GGCACAGCGTCGCGATCTTCTCGGAAGGTCTCGTCGGTGTGGTCGAACGTTTCCTCAAGAAGGGCAGCAAGGTGTATGTC
GAAGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGAACGGTCAGGACCGCTACACCACCGAAGTGGTGCTACGCGGCAT
GAACGGCACGCTGACCATGCTGGACGGAGCGCAGGGCGGCGGTGGTGGCGGTTACCAGCGCTCGGGCGGCGGTGGCAGCG
GCAACTACAGCGGCGGCGACCAGGGCGGCGGCTGGAACCAGGGTGGTGGCGGTTCGGGCGGTTCGGGCGGCGGCTCGAAC
TACGACGATCTCGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

44.5

100

0.524
  ssb Vibrio cholerae strain A1552

47.778

100

0.506
  ssb Neisseria meningitidis MC58

37.989

100

0.4
  ssb Neisseria gonorrhoeae MS11

37.43

100

0.394
  ssbA Bacillus subtilis subsp. subtilis str. 168

36

100

0.371