Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LW136_RS19745 Genome accession   NZ_CP090366
Coordinates   4137990..4139486 (+) Length   498 a.a.
NCBI ID   WP_234173770.1    Uniprot ID   -
Organism   Stutzerimonas kunmingensis strain 7850S     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4132990..4144486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW136_RS19715 (LW136_19715) sutA 4133290..4133619 (-) 330 WP_003283413.1 transcriptional regulator SutA -
  LW136_RS19720 (LW136_19720) - 4133698..4134123 (-) 426 WP_014821767.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LW136_RS19725 (LW136_19725) - 4134226..4135476 (-) 1251 WP_014821768.1 ammonium transporter -
  LW136_RS19730 (LW136_19730) - 4135600..4136916 (-) 1317 WP_046618355.1 ammonium transporter -
  LW136_RS19735 (LW136_19735) glnK 4136955..4137293 (-) 339 WP_003096476.1 P-II family nitrogen regulator -
  LW136_RS19740 (LW136_19740) - 4137692..4137952 (+) 261 WP_013981620.1 accessory factor UbiK family protein -
  LW136_RS19745 (LW136_19745) comM 4137990..4139486 (+) 1497 WP_234173770.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LW136_RS19750 (LW136_19750) - 4139618..4141591 (+) 1974 WP_234173772.1 BCCT family transporter -
  LW136_RS19755 (LW136_19755) - 4141631..4143268 (-) 1638 WP_234175290.1 putative bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53016.80 Da        Isoelectric Point: 7.9501

>NTDB_id=641743 LW136_RS19745 WP_234173770.1 4137990..4139486(+) (comM) [Stutzerimonas kunmingensis strain 7850S]
MSLAIVHSRAQIGVEAPPVTVEAHLANGLPALTLVGLPETAVKESKDRVRSAILTSGFDFPARRITLNLAPADLPKDGGR
FDLSIALGILAASGQLPAERLDNLECLGELALSGALRPVQGVLPAALAARAAGRALLVPRANAEEASLASGLTVYAAEHL
LEVAAHFNGITPLEPYVAQGLLRQTQPYPDLADVQGQQAAKRGLLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLDE
QEALEVAAIHSVASHSPLEHWPQRPFRQPHHSASGPALVGGGSRPQPGEITLAHQGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDKVRFPARFQLVAAMNPCPCGYLGDPNGRCRCTPDQIQRYRNKLSGPLLDRIDLHLTVAREATALNAPPQT
GQSSAVLAAQVAQARQLQLARQGCANAFLDLAGLRSHCQLGTEDQAWLERACERLALSLRAAHRLLKVARTLADLEQAGR
ISRQHLAEALQYRPGSQG

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=641743 LW136_RS19745 WP_234173770.1 4137990..4139486(+) (comM) [Stutzerimonas kunmingensis strain 7850S]
ATGTCCCTGGCCATAGTTCATAGCCGCGCGCAGATTGGCGTCGAAGCGCCGCCGGTGACCGTCGAAGCTCATCTGGCCAA
CGGCCTGCCGGCGCTGACCCTGGTCGGCCTGCCGGAAACCGCGGTCAAGGAAAGCAAGGATCGCGTGCGCAGCGCCATTC
TCACCTCCGGCTTCGATTTTCCCGCTCGACGCATCACCCTCAACCTCGCCCCCGCCGACCTGCCAAAGGACGGCGGCCGC
TTCGACCTGTCCATTGCCCTGGGCATTCTCGCCGCCAGCGGTCAGCTGCCGGCCGAGCGGCTCGACAACCTGGAATGCCT
CGGCGAACTGGCACTGTCCGGCGCCTTGCGCCCGGTCCAGGGAGTCCTGCCGGCTGCCCTCGCCGCTCGAGCGGCAGGGC
GCGCGCTGCTGGTGCCACGGGCCAACGCCGAGGAAGCCAGCCTGGCCTCGGGGCTCACCGTCTATGCCGCCGAGCACTTG
CTCGAGGTCGCAGCGCACTTCAACGGCATCACGCCGCTCGAACCCTATGTGGCCCAGGGCCTGCTACGACAGACTCAGCC
TTACCCCGACCTGGCCGACGTGCAAGGTCAGCAGGCCGCCAAGCGCGGGCTGCTGATCGCCGCGGCTGGCGCGCACAACC
TGCTGTTTTCCGGCCCGCCGGGCACCGGCAAGACACTCCTGGCCAGCCGCCTGCCCGGTCTCTTGCCGCCGCTGGACGAG
CAGGAGGCGCTGGAAGTCGCCGCCATCCATTCGGTGGCCAGTCACAGCCCTCTCGAGCATTGGCCGCAACGGCCCTTTCG
GCAGCCCCATCACAGTGCATCCGGCCCGGCGCTGGTCGGTGGCGGCAGCCGTCCGCAGCCAGGGGAGATCACCCTGGCGC
ATCAGGGCGTACTGTTTCTCGACGAGCTGCCGGAGTTCGACCGCAAGGTGCTCGAGGTCTTGCGTGAGCCACTGGAGTCG
GGGCATATCGTCATCGCTCGGGCCCGCGACAAGGTGCGTTTTCCGGCGCGTTTCCAGCTGGTGGCGGCGATGAATCCCTG
CCCCTGTGGCTACCTCGGTGATCCCAACGGGCGCTGCCGCTGCACGCCGGACCAGATCCAGCGCTATCGCAACAAGCTCT
CCGGCCCGCTGCTCGACCGCATCGACCTGCATTTGACCGTGGCGCGCGAGGCGACGGCCCTCAACGCTCCGCCGCAGACG
GGCCAGAGCAGTGCCGTACTCGCCGCCCAGGTAGCCCAGGCGCGACAGCTGCAACTCGCCCGTCAGGGCTGCGCCAACGC
CTTCCTCGACCTCGCCGGATTGCGCAGCCATTGCCAGCTCGGCACCGAGGATCAGGCCTGGCTGGAGCGCGCCTGCGAAC
GCCTGGCGCTGTCGCTGCGCGCCGCGCACCGCCTGCTCAAGGTGGCGCGCACCCTCGCCGATCTGGAACAGGCCGGGCGA
ATCAGCCGCCAGCACCTCGCCGAAGCCCTGCAGTACCGGCCCGGCAGTCAAGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

56.97

99.398

0.566
  comM Vibrio cholerae strain A1552

56.364

99.398

0.56
  comM Haemophilus influenzae Rd KW20

55.179

100

0.556
  comM Glaesserella parasuis strain SC1401

55.09

100

0.554
  comM Legionella pneumophila str. Paris

51.581

100

0.524
  comM Legionella pneumophila strain ERS1305867

51.581

100

0.524
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.47