Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LW136_RS19450 Genome accession   NZ_CP090366
Coordinates   4077414..4079528 (-) Length   704 a.a.
NCBI ID   WP_234173710.1    Uniprot ID   -
Organism   Stutzerimonas kunmingensis strain 7850S     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4072414..4084528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW136_RS19435 (LW136_19435) - 4074141..4075727 (-) 1587 WP_234173707.1 AAA family ATPase -
  LW136_RS19440 (LW136_19440) aroB 4075738..4076841 (-) 1104 WP_230358125.1 3-dehydroquinate synthase -
  LW136_RS19445 (LW136_19445) aroK 4076865..4077410 (-) 546 WP_014821719.1 shikimate kinase AroK -
  LW136_RS19450 (LW136_19450) pilQ 4077414..4079528 (-) 2115 WP_234173710.1 type IV pilus secretin PilQ Machinery gene
  LW136_RS19455 (LW136_19455) pilP 4079582..4080109 (-) 528 WP_003301042.1 type 4a pilus biogenesis lipoprotein PilP -
  LW136_RS19460 (LW136_19460) pilO 4080106..4080729 (-) 624 WP_046618307.1 type 4a pilus biogenesis protein PilO -
  LW136_RS19465 (LW136_19465) pilN 4080726..4081298 (-) 573 WP_014821721.1 type 4a pilus biogenesis protein PilN -
  LW136_RS19470 (LW136_19470) pilM 4081298..4082362 (-) 1065 WP_023446117.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 704 a.a.        Molecular weight: 75484.78 Da        Isoelectric Point: 4.7002

>NTDB_id=641740 LW136_RS19450 WP_234173710.1 4077414..4079528(-) (pilQ) [Stutzerimonas kunmingensis strain 7850S]
MNTTLSRLGISLLAAFISPALLAANLNALDVAALPGDRVELKLAFDEPVATPRGYTLDQPARIALDLPGVSNKLGAKNRE
LGVGNARSVTVVEAQGRTRLIVNLNTLVPYSTRVDGNNIFVVLGESSGAVRAPAVSAAPVAPVAAPAKAMAVGKVIENID
FRRGEDGAGNVVITLSDPSVGSTIEEQGGKIRVLFDKAQLPEALRVRLDVQDFATPVKFVDSSAQAGGASVAIEPTGRYD
YLAYQTDNKLTISIKPLTEDEAEKRKAERFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVAGNITLRLQNVPW
DQALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELESQRQIAELAPLRREVVQVNYAKAADIARLFQSVTGSDAITA
DRGSIAVDDRTNNIIAYQTQERLDELRRIVVQLDIPVRQVMIEARIVEANVGYDKALGVRWGGNYTNDNWGFYGKDGAIG
VDEETGRAGLPGTDKVGNFTLKDALAPVPFVDLGVANSTAGIGIGYVSDYGILDLQLSAMEKTGNGEIVSQPKVVTADKE
TAKILKGSEIPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDAPDFANALNGVPPINKNEVNAKVLVTD
GETIVIGGVFSNSQISSIEKVPFLGDVPFVGRLFRRDIVEDTKSELLVFLTPRILNYRAVAVGQ

Nucleotide


Download         Length: 2115 bp        

>NTDB_id=641740 LW136_RS19450 WP_234173710.1 4077414..4079528(-) (pilQ) [Stutzerimonas kunmingensis strain 7850S]
ATGAACACTACCCTTTCACGCCTAGGTATCTCTTTGCTGGCGGCGTTTATTTCTCCAGCCCTGCTGGCGGCCAACCTGAA
CGCCCTCGATGTCGCTGCGCTGCCTGGCGACCGTGTTGAATTGAAGCTTGCGTTCGACGAACCGGTGGCTACACCACGTG
GTTATACCCTCGATCAGCCTGCGCGGATCGCGCTCGACCTGCCCGGCGTATCCAATAAGCTCGGAGCGAAGAATCGCGAG
CTAGGAGTTGGCAATGCGCGGAGCGTGACCGTCGTTGAAGCCCAAGGCCGTACCCGACTGATCGTTAATCTCAATACTCT
GGTGCCCTACTCCACTCGCGTAGATGGTAACAATATCTTTGTGGTATTGGGCGAAAGTTCGGGTGCTGTACGTGCCCCAG
CTGTTTCAGCTGCGCCCGTTGCTCCAGTGGCTGCGCCTGCCAAGGCGATGGCTGTAGGTAAGGTGATCGAGAATATCGAT
TTCCGTCGGGGTGAAGACGGTGCCGGAAACGTCGTTATTACGCTCTCTGACCCATCGGTAGGCTCGACCATTGAGGAGCA
GGGCGGAAAGATTCGTGTCCTCTTCGACAAGGCTCAACTGCCAGAGGCGCTGCGTGTTCGTCTTGATGTTCAGGATTTCG
CTACGCCCGTGAAATTTGTCGATTCGTCCGCTCAGGCTGGTGGAGCTAGTGTCGCCATCGAGCCAACCGGTCGATACGAT
TATCTGGCGTACCAGACAGACAACAAACTGACCATCAGCATCAAGCCTCTGACCGAGGATGAAGCCGAGAAGCGCAAGGC
TGAGCGTTTTGCTTATTCGGGCGAGAAACTCTCGCTCAACTTTCAGGATATCGACGTTCGTTCCGTACTGCAGCTGATCG
CTGACTTCACCGATCTGAACCTGGTGGCGAGCGATACCGTCGCTGGCAACATAACCCTGCGTCTGCAAAACGTGCCTTGG
GACCAGGCGCTGGATCTGGTGCTTAAAACCAAAGGGCTGGATAAGCGCCAGGTTGGTAACGTGCTCCTGGTCGCGCCTGC
CGACGAGATTGCTGCCCGTGAGCGTCAGGAGCTTGAGTCGCAGCGGCAGATCGCCGAGCTTGCTCCACTTCGTCGCGAGG
TCGTTCAGGTCAATTACGCAAAGGCTGCCGATATTGCGCGGCTTTTTCAGTCGGTGACGGGTAGCGATGCCATTACAGCC
GATCGAGGTTCGATCGCGGTCGACGATCGTACAAACAACATCATTGCGTATCAAACGCAAGAGCGGCTGGATGAATTGCG
CCGCATCGTTGTGCAGCTAGATATTCCTGTGAGGCAGGTAATGATTGAAGCGCGCATCGTCGAGGCTAACGTTGGGTACG
ACAAAGCGCTTGGAGTTCGGTGGGGCGGCAATTACACCAACGATAATTGGGGGTTCTACGGTAAAGATGGCGCTATTGGT
GTTGACGAAGAAACAGGGCGTGCAGGTTTGCCTGGAACCGACAAAGTCGGTAACTTCACCCTGAAGGATGCTTTGGCGCC
GGTTCCATTCGTCGACTTGGGTGTGGCGAATAGTACCGCCGGGATCGGGATTGGCTATGTGTCGGACTACGGCATCTTAG
ATCTGCAGCTGTCTGCAATGGAAAAGACCGGGAATGGGGAGATCGTTTCGCAGCCCAAGGTCGTAACGGCTGATAAGGAA
ACCGCTAAGATCTTGAAGGGTTCCGAGATACCCTATCAAGAGGCCAGTTCGAGTGGTGCCACCTCTACATCCTTCAAAGA
GGCAGCGCTGTCGTTAGAGGTGACGCCGCAAATCACTCCTGACAACCGCATCATCATGGAAGTCAAGGTCACAAAGGACG
CCCCTGATTTCGCCAACGCACTGAATGGCGTGCCCCCGATTAACAAGAATGAAGTCAATGCCAAGGTCCTTGTGACGGAT
GGAGAGACGATAGTCATTGGTGGCGTCTTCTCCAATAGCCAGATCAGCAGTATCGAAAAAGTTCCTTTCCTGGGTGATGT
TCCGTTCGTTGGTCGTTTGTTCCGACGAGATATAGTAGAAGATACGAAATCCGAGCTTTTGGTTTTCCTAACGCCTAGAA
TCCTCAACTATCGAGCGGTCGCCGTAGGGCAATAG

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(539-695)

Bacterial type II/III secretion system short domain (Secretin_N)

(373-439)

Secretin and TonB N terminus short domain (STN)

(300-346)

AMIN domain (AMIN)

(38-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

74.022

100

0.753
  comQ Acinetobacter baylyi ADP1

41.727

98.722

0.412
  pilQ Acinetobacter baumannii strain A118

40.709

100

0.408
  pilQ Acinetobacter baumannii D1279779

40.709

100

0.408