Detailed information NTG0641645

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: LXN51_RS08305
• Genome accession: NZ_CP090355
• Coordinates: 1755752..1757245 (+)
• Length: 497 a.a.
• NCBI ID: WP_234206145.1
• Uniprot ID: -
• Organism: Pseudomonas kribbensis strain H38E-23
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1750752..1762245

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LXN51_RS08275 (LXN51_08275)	-	1751054..1751479 (-)	426	WP_085696853.1	secondary thiamine-phosphate synthase enzyme YjbQ	-
LXN51_RS08280 (LXN51_08280)	-	1751695..1753032 (-)	1338	WP_234206140.1	ammonium transporter	-
LXN51_RS08285 (LXN51_08285)	glnK	1753070..1753408 (-)	339	WP_002555808.1	P-II family nitrogen regulator	-
LXN51_RS08290 (LXN51_08290)	-	1753807..1754067 (+)	261	WP_011336527.1	accessory factor UbiK family protein	-
LXN51_RS08295 (LXN51_08295)	-	1754463..1754990 (+)	528	WP_085696852.1	Bro-N domain-containing protein	-
LXN51_RS08300 (LXN51_08300)	-	1754985..1755254 (-)	270	WP_234206143.1	HigA family addiction module antitoxin	-
LXN51_RS08305 (LXN51_08305)	comM	1755752..1757245 (+)	1494	WP_234206145.1	YifB family Mg chelatase-like AAA ATPase	Machinery gene
LXN51_RS08310 (LXN51_08310)	-	1757351..1759327 (-)	1977	WP_227233890.1	methyl-accepting chemotaxis protein	-
LXN51_RS08315 (LXN51_08315)	-	1759512..1760432 (-)	921	WP_085685856.1	LysR substrate-binding domain-containing protein	-
LXN51_RS08320 (LXN51_08320)	-	1760591..1761985 (+)	1395	WP_234206146.1	NorM family multidrug efflux MATE transporter	-

Sequence

Protein

• Length: 497 a.a.
• Molecular weight: 52783.00 Da
• Isoelectric Point: 8.0035

>NTDB_id=641645 LXN51_RS08305 WP_234206145.1 1755752..1757245(+) (comM) [Pseudomonas kribbensis strain H38E-23]
MSLAIVHSRAQIGVDAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGAVRAVRGVLPAALAARKAGRTLVVPRANAEEACLASGLRVIAVDHL
LEAVAHFNGHTPVEPYVSDGLIHAAKPYPDLNEVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLAE
SEALEVAAIQSVASGAPLTHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GCIVIARAKERVRFPARFQLVAAMNPCPCGYLGEPSGKCSCTPDMVQRYRNKLSGPLLDRIDLHLTVAREATALNPAVKP
GEDSASAATLVAEARERQQKRQGCANAFLDLPGLKKHCKLSTADEAWLETACERLILSLRSAHRLLKVARTLADLEKCAD
ISREHLAEALQYRPATQ

Nucleotide

• Length: 1494 bp

>NTDB_id=641645 LXN51_RS08305 WP_234206145.1 1755752..1757245(+) (comM) [Pseudomonas kribbensis strain H38E-23]
ATGTCCCTCGCCATCGTCCACAGTCGCGCCCAGATTGGCGTGGATGCTCCCGCTGTCACCGTCGAAGTCCACCTGGCCAA
CGGCTTGCCCTCGCTGACCATGGTCGGCCTGCCCGAAGCGGCGGTGAAAGAGAGCAAGGACCGGGTGCGCAGTGCGATCA
TCAATTCCGGGCTGCAGTTTCCGGCGCGGCGGATCACGTTGAATCTGGCGCCGGCGGATCTGCCCAAGGATGGCGGGCGG
TTCGATCTGGCGATTGCGCTGGGGATTCTGTCGGCGAGCGTGCAGGTGCCGACGTTGACGCTGGATGACGTGGAATGTCT
GGGTGAGCTGGCGTTATCCGGCGCTGTGCGGGCGGTGCGCGGGGTGTTGCCTGCGGCGCTGGCAGCGCGCAAGGCCGGGC
GGACGCTGGTGGTGCCACGGGCGAATGCCGAGGAGGCTTGTCTGGCTTCGGGACTGAGGGTGATTGCGGTGGATCATCTG
CTGGAGGCCGTGGCGCATTTCAATGGACATACACCGGTCGAACCCTATGTCTCGGACGGGCTGATCCATGCCGCCAAACC
CTATCCCGACCTGAATGAAGTACAGGGCCAACTGGCCGCCAAGCGGGCGCTGCTGATTGCCGCCGCCGGTGCACACAACC
TGTTGTTCAGCGGGCCACCCGGGACGGGCAAGACGTTGCTGGCCAGTCGATTGCCGGGGTTGCTGCCACCGCTGGCCGAG
AGTGAAGCGCTGGAGGTGGCGGCGATTCAATCCGTCGCCAGTGGAGCGCCGCTGACCCATTGGCCACAGCGCCCGTTCCG
CCAGCCGCATCACTCGGCCTCCGGGCCGGCACTGGTCGGTGGCAGCTCAAAACCGCAACCCGGCGAAATCACCCTCGCCC
ATCACGGCGTGTTGTTTCTCGATGAGCTGCCCGAGTTTGATCGCAAGGTGCTGGAGGTTCTGCGTGAACCGCTGGAGTCC
GGCTGCATCGTGATCGCCCGTGCCAAGGAGCGGGTGCGCTTTCCGGCGAGATTCCAGCTGGTGGCGGCGATGAATCCCTG
CCCCTGTGGATATCTCGGCGAACCGAGCGGCAAATGCTCATGCACACCGGACATGGTGCAGCGCTATCGCAACAAACTGT
CGGGGCCGTTGCTGGACCGGATCGATTTGCACCTGACAGTAGCGCGGGAGGCGACAGCGTTGAACCCTGCCGTGAAACCG
GGAGAAGACAGCGCCAGCGCGGCCACATTGGTCGCCGAGGCCCGCGAGCGTCAGCAAAAACGCCAGGGCTGCGCCAATGC
GTTTCTCGATTTGCCGGGGCTGAAGAAGCACTGCAAGTTATCCACAGCCGATGAAGCCTGGCTGGAGACGGCGTGCGAAA
GACTGATCTTGTCGTTGCGCTCGGCGCACCGGTTGCTCAAGGTGGCGAGGACATTGGCGGATCTGGAGAAGTGCGCGGAT
ATCAGTCGCGAGCATCTGGCCGAAGCGTTGCAATACCGGCCGGCGACTCAGTAA

Domains

Predicted by InterproScan.

• Magnesium chelatase, subunit ChlI (Mg_chelatase) (190-390)

• Subunit ChlI of Mg-chelatase (ChlI) (21-142)

• Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C) (401-493)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Vibrio cholerae strain A1552	54.949	99.598	0.547
comM	Vibrio campbellii strain DS40M4	54.545	99.598	0.543
comM	Glaesserella parasuis strain SC1401	53	100	0.533
comM	Haemophilus influenzae Rd KW20	53.106	100	0.533
comM	Legionella pneumophila str. Paris	50	100	0.503
comM	Legionella pneumophila strain ERS1305867	50	100	0.503
RA0C_RS07335	Riemerella anatipestifer ATCC 11845 = DSM 15868	45.418	100	0.459