Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LZV00_RS20015 Genome accession   NZ_CP090311
Coordinates   4252871..4254364 (+) Length   497 a.a.
NCBI ID   WP_265536962.1    Uniprot ID   -
Organism   Pseudomonas kielensis strain 5BT     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4247871..4259364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZV00_RS19990 (LZV00_19950) sutA 4249173..4249499 (-) 327 WP_019694242.1 transcriptional regulator SutA -
  LZV00_RS19995 (LZV00_19955) - 4249602..4250027 (-) 426 WP_166589260.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  LZV00_RS20000 (LZV00_19960) - 4250243..4251580 (-) 1338 WP_166589261.1 ammonium transporter -
  LZV00_RS20005 (LZV00_19965) glnK 4251616..4251954 (-) 339 WP_095164831.1 P-II family nitrogen regulator -
  LZV00_RS20010 (LZV00_19970) - 4252369..4252629 (+) 261 WP_095164833.1 accessory factor UbiK family protein -
  LZV00_RS20015 (LZV00_19975) comM 4252871..4254364 (+) 1494 WP_265536962.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LZV00_RS20020 (LZV00_19980) - 4254378..4255298 (-) 921 WP_265536963.1 LysR substrate-binding domain-containing protein -
  LZV00_RS20025 (LZV00_19985) - 4255457..4256854 (+) 1398 WP_166589338.1 NorM family multidrug efflux MATE transporter -
  LZV00_RS20030 (LZV00_19990) - 4256873..4258546 (-) 1674 WP_166589269.1 bifunctional diguanylate cyclase/phosphodiesterase -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53359.41 Da        Isoelectric Point: 7.7496

>NTDB_id=641457 LZV00_RS20015 WP_265536962.1 4252871..4254364(+) (comM) [Pseudomonas kielensis strain 5BT]
MSLSIVHSRAQIGVEAPAVTVEVHLANGLPSLTMVGLPEAAVKESKDRVRSAIINSGLQFPARRITLNLAPADLPKDGGR
FDLAIALGILSASVQVPTLTLDDVECLGELALSGEVRAVRGVLPAALAARQAGRMLVVPWANAEEACLASGLKVIAVHHL
LEVVAHFNGHTPIEPYRSNGLLHAIKPYPDLSEVQGQAAAKRALLIAAAGVHNLLFSGPPGTGKTLLASRLPGLLPPLTE
SEALEVAAIQSVASGVPLSHWPQRPFRQPHHSASGPALVGGSSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPLES
GHIVIARARDRVRFPARFQLVAAMNPCPCGYLGEPSGRCSCTPEMVQRYRHKLSGPLLDRIDLHLTVAREATALNPATQP
GDNSACAAERVARAREVQQQRQGCPNAFLDLPGLRQHCQLSTADEHWLESACERLTLSLRAAHRLLKVARTLADLEHVQG
ISREHLAEALHYRPTNQ

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=641457 LZV00_RS20015 WP_265536962.1 4252871..4254364(+) (comM) [Pseudomonas kielensis strain 5BT]
ATGTCCCTGTCCATCGTCCACAGCCGCGCCCAGATTGGCGTGGAGGCGCCGGCTGTCACCGTTGAAGTCCACCTGGCCAA
TGGCTTGCCATCACTGACGATGGTCGGCTTGCCCGAAGCGGCGGTCAAAGAGAGCAAGGATCGGGTGCGCAGCGCGATCA
TCAATTCGGGCCTGCAGTTTCCGGCACGGCGCATCACCTTGAATCTCGCCCCCGCCGACTTGCCCAAGGACGGCGGGCGC
TTCGACCTGGCGATTGCCCTGGGGATACTTTCGGCCAGCGTACAGGTGCCCACCCTGACCCTGGACGACGTGGAGTGCCT
GGGCGAACTGGCGCTGTCCGGTGAGGTGCGGGCCGTACGCGGAGTGCTGCCGGCCGCCCTGGCGGCGCGCCAGGCCGGCC
GGATGCTGGTGGTGCCCTGGGCGAATGCCGAGGAAGCCTGCCTGGCCTCCGGACTCAAGGTGATCGCGGTGCATCACTTG
CTGGAGGTGGTCGCTCACTTCAATGGCCATACCCCCATCGAACCTTATCGCTCCAATGGCTTGCTCCACGCCATCAAGCC
CTACCCCGACTTGAGCGAAGTACAGGGCCAGGCCGCCGCCAAGCGGGCCCTGCTGATTGCCGCAGCGGGCGTCCATAACC
TGCTGTTCAGCGGACCACCCGGCACCGGGAAAACCCTGCTGGCCAGTCGCTTGCCCGGGTTGCTGCCGCCGCTGACGGAA
AGCGAGGCGCTGGAAGTGGCGGCGATCCAGTCGGTTGCCAGTGGTGTGCCGTTGAGTCATTGGCCGCAACGTCCTTTCCG
CCAACCCCATCACTCAGCGTCCGGCCCGGCGCTGGTGGGTGGCAGTTCAAAACCCCAGCCCGGGGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTTGACGAGTTGCCGGAGTTCGATCGCAAGGTGCTGGAGGTATTACGAGAGCCGCTGGAGTCC
GGTCATATCGTGATTGCCCGGGCCCGGGACCGCGTGCGTTTCCCGGCCCGTTTCCAGTTGGTGGCGGCCATGAACCCCTG
CCCCTGTGGCTATCTGGGCGAACCCAGCGGCCGCTGCTCCTGCACCCCGGAGATGGTCCAGCGTTATCGGCACAAGCTCT
CCGGCCCGCTGCTCGACCGCATCGACCTGCACCTGACCGTCGCCCGCGAAGCCACTGCACTCAATCCCGCCACCCAGCCG
GGTGACAACTCCGCCTGTGCCGCCGAGCGCGTGGCCAGGGCTCGCGAGGTTCAGCAGCAGCGCCAGGGCTGCCCCAACGC
CTTCCTCGACCTGCCTGGCCTGCGCCAGCATTGCCAGTTATCCACAGCAGACGAACACTGGCTGGAGAGCGCCTGCGAAC
GCCTGACCCTGTCGCTCAGGGCCGCCCACCGACTGCTCAAGGTCGCCCGCACCCTGGCCGATCTCGAGCACGTTCAGGGC
ATCAGCCGCGAACACCTGGCCGAAGCGCTGCACTATCGGCCGACCAATCAGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.11

100

0.553
  comM Vibrio campbellii strain DS40M4

54.509

100

0.547
  comM Haemophilus influenzae Rd KW20

53.307

100

0.535
  comM Glaesserella parasuis strain SC1401

52.579

100

0.533
  comM Legionella pneumophila str. Paris

50.602

100

0.507
  comM Legionella pneumophila strain ERS1305867

50.602

100

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.691

100

0.459