Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   T223_RS10435 Genome accession   NC_023066
Coordinates   2212225..2212860 (+) Length   211 a.a.
NCBI ID   WP_012613901.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa LES431     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2207225..2217860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T223_RS10420 (T223_10480) - 2207931..2209175 (+) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -
  T223_RS10425 (T223_10485) - 2209263..2209796 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  T223_RS10430 (T223_10490) comA 2209927..2212152 (+) 2226 WP_003119806.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  T223_RS10435 (T223_10495) exbB 2212225..2212860 (+) 636 WP_012613901.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  T223_RS10440 (T223_10500) - 2212857..2213297 (+) 441 WP_003091161.1 ExbD/TolR family protein -
  T223_RS10445 (T223_10505) lpxK 2213297..2214295 (+) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  T223_RS10450 (T223_10510) - 2214333..2214518 (+) 186 WP_003091157.1 Trm112 family protein -
  T223_RS10455 (T223_10515) kdsB 2214518..2215282 (+) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  T223_RS10460 (T223_10520) - 2215282..2215746 (+) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  T223_RS10465 (T223_10525) murB 2215743..2216762 (+) 1020 WP_003124431.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22875.99 Da        Isoelectric Point: 6.2522

>NTDB_id=64136 T223_RS10435 WP_012613901.1 2212225..2212860(+) (exbB) [Pseudomonas aeruginosa LES431]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQINGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=64136 T223_RS10435 WP_012613901.1 2212225..2212860(+) (exbB) [Pseudomonas aeruginosa LES431]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAATGGCA
AACAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806

Multiple sequence alignment