Detailed information    

insolico Bioinformatically predicted

Overview

Name   htrA   Type   Regulator
Locus tag   LVJ09_RS09080 Genome accession   NZ_CP090216
Coordinates   1886653..1887909 (+) Length   418 a.a.
NCBI ID   WP_222317030.1    Uniprot ID   -
Organism   Vagococcus lutrae strain VF20     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1881653..1892909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ09_RS09055 (LVJ09_09045) - 1882470..1882970 (+) 501 WP_000376623.1 GNAT family N-acetyltransferase -
  LVJ09_RS09060 (LVJ09_09050) - 1883477..1884241 (+) 765 WP_001389365.1 IS6-like element IS6100 family transposase -
  LVJ09_RS09065 (LVJ09_09055) - 1884316..1884588 (+) 273 WP_258456402.1 SprT-like domain-containing protein -
  LVJ09_RS09070 (LVJ09_09060) - 1884631..1885369 (-) 739 Protein_1754 ISL3-like element ISPst2 family transposase -
  LVJ09_RS09075 (LVJ09_09065) rlmH 1885837..1886316 (-) 480 WP_274981601.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  LVJ09_RS09080 (LVJ09_09070) htrA 1886653..1887909 (+) 1257 WP_222317030.1 S1C family serine protease Regulator
  LVJ09_RS09085 (LVJ09_09075) - 1887946..1888752 (-) 807 WP_274981602.1 MBL fold metallo-hydrolase -
  LVJ09_RS09090 (LVJ09_09080) - 1888770..1889600 (-) 831 WP_202585780.1 two-component system regulatory protein YycI -
  LVJ09_RS09095 (LVJ09_09085) - 1889600..1890904 (-) 1305 WP_274981603.1 YycH family regulatory protein -
  LVJ09_RS09100 (LVJ09_09090) walK 1890901..1892727 (-) 1827 WP_274981604.1 cell wall metabolism sensor histidine kinase WalK -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 44306.69 Da        Isoelectric Point: 4.5224

>NTDB_id=641252 LVJ09_RS09080 WP_222317030.1 1886653..1887909(+) (htrA) [Vagococcus lutrae strain VF20]
MKTYETSTSSPLKRFGTGLLGGLIGGAVAFGLLFNFNQGSDKTSQPLNNHGEATKVEKVAYDVENNTSKAVEKVQGAVVS
VINLQKRQEMADEYGLGGLFGLPQQPEKKSENNQDELETSSEGSGVIYKKDGKNAYVVTNNHVVEGSDALEVLMNDGSKV
SAELVGADAYTDLAVLKISAEGVKDTAEFGDSDVLKIGEPAIAIGSPLGSDYANSVTQGIISAKNRTITNQNPETGQPTN
INAIQTDAAINPGNSGGPLINIAGQVIGINSIKIARAASGISAEGMGFSIPSNDVVDIINQLEQNGQVIRPMLGVTMIDL
AVISQEQQEKILKLPTDIKSGVIIRSVQAASPAEAAGLKQYDVIVGIDGKEIENATDLQTILYTKKVGDEIEVTYYREHH
KNTVKVSLSLDRSSLEKE

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=641252 LVJ09_RS09080 WP_222317030.1 1886653..1887909(+) (htrA) [Vagococcus lutrae strain VF20]
ATGAAAACATATGAAACATCTACTTCATCCCCTCTTAAACGTTTTGGAACGGGACTTTTAGGCGGACTCATTGGAGGTGC
CGTCGCGTTTGGTCTTTTATTTAATTTCAATCAAGGCAGTGATAAGACATCTCAGCCATTAAACAATCATGGTGAAGCTA
CGAAAGTTGAGAAAGTGGCTTATGATGTGGAAAACAATACTTCTAAAGCGGTGGAGAAAGTACAAGGCGCTGTCGTTTCT
GTCATTAATTTACAAAAACGACAAGAAATGGCGGATGAATATGGACTAGGTGGACTATTCGGTTTACCGCAACAACCCGA
AAAGAAATCAGAAAATAATCAAGACGAGCTCGAAACTTCTAGCGAGGGCAGTGGGGTTATTTATAAAAAAGATGGTAAAA
ACGCCTATGTTGTGACTAATAATCACGTCGTGGAAGGTTCTGATGCTTTAGAAGTTTTAATGAACGACGGTTCAAAAGTT
TCCGCTGAACTAGTTGGTGCCGACGCTTATACTGATTTGGCTGTTTTAAAAATCAGTGCCGAAGGCGTAAAAGATACTGC
TGAATTTGGTGATTCTGATGTTCTAAAAATTGGAGAACCTGCGATTGCGATTGGTTCTCCACTCGGTTCTGATTATGCTA
ACTCTGTGACACAGGGTATCATTTCCGCTAAAAACCGAACGATCACGAATCAAAATCCAGAAACAGGACAACCTACGAAT
ATTAATGCCATTCAAACAGATGCGGCGATTAATCCTGGGAACTCTGGTGGGCCATTAATTAATATTGCAGGCCAAGTAAT
CGGAATTAACTCCATTAAGATTGCGCGAGCAGCTAGTGGTATCTCTGCTGAGGGTATGGGCTTTTCTATTCCAAGTAATG
ATGTTGTCGATATTATTAATCAACTAGAACAAAACGGACAAGTCATTCGCCCAATGTTAGGTGTGACGATGATTGATTTA
GCGGTCATTAGCCAAGAACAACAAGAAAAAATCTTAAAATTACCAACAGATATTAAATCTGGTGTAATCATTCGTAGCGT
TCAGGCCGCTTCTCCTGCTGAAGCAGCAGGCTTAAAACAGTATGATGTGATTGTAGGAATTGATGGTAAAGAGATTGAAA
ATGCGACTGACCTTCAAACCATTCTATATACGAAAAAAGTCGGGGACGAGATTGAGGTAACCTATTATCGTGAGCACCAC
AAAAATACCGTGAAAGTTTCCCTTTCACTAGACCGTTCTTCTTTAGAAAAAGAATAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(10-408)

Trypsin-like peptidase domain (Trypsin_2)

(123-269)

PDZ domain (PDZ_2)

(312-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

54.331

91.148

0.495
  htrA Streptococcus gordonii str. Challis substr. CH1

48.379

95.933

0.464
  htrA Streptococcus mitis NCTC 12261

49.081

91.148

0.447
  htrA Streptococcus pneumoniae TIGR4

50.139

86.364

0.433
  htrA Streptococcus pneumoniae D39

50.139

86.364

0.433
  htrA Streptococcus pneumoniae Rx1

50.139

86.364

0.433
  htrA Streptococcus pneumoniae R6

50.139

86.364

0.433