Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LXM48_RS14035 Genome accession   NZ_CP090180
Coordinates   2866582..2868069 (+) Length   495 a.a.
NCBI ID   WP_234304188.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 2861582..2873069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS14010 (LXM48_14010) ribD 2862484..2863587 (-) 1104 WP_234304186.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  LXM48_RS14015 (LXM48_14015) nrdR 2863602..2864060 (-) 459 WP_004692852.1 transcriptional regulator NrdR -
  LXM48_RS14020 (LXM48_14020) - 2864212..2865615 (-) 1404 WP_234304187.1 ammonium transporter -
  LXM48_RS14025 (LXM48_14025) glnK 2865675..2866013 (-) 339 WP_004281042.1 P-II family nitrogen regulator -
  LXM48_RS14030 (LXM48_14030) - 2866289..2866516 (+) 228 WP_004692854.1 accessory factor UbiK family protein -
  LXM48_RS14035 (LXM48_14035) comM 2866582..2868069 (+) 1488 WP_234304188.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LXM48_RS14040 (LXM48_14040) - 2868178..2868915 (-) 738 WP_234304189.1 TorF family putative porin -
  LXM48_RS14045 (LXM48_14045) - 2869263..2870033 (-) 771 WP_234304190.1 TorF family putative porin -
  LXM48_RS14050 (LXM48_14050) - 2870492..2871817 (+) 1326 WP_010325681.1 OprD family outer membrane porin -
  LXM48_RS14055 (LXM48_14055) ppa 2871920..2872447 (-) 528 WP_058868713.1 inorganic diphosphatase -
  LXM48_RS14060 (LXM48_14060) - 2872566..2872970 (-) 405 WP_005401007.1 MAPEG family protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54383.21 Da        Isoelectric Point: 7.8055

>NTDB_id=641036 LXM48_RS14035 WP_234304188.1 2866582..2868069(+) (comM) [Acinetobacter johnsonii strain DJ-Red]
MSFAKIYTRALLGLHAPSVEVEVHLSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDSSR
LDLPIALGILIASGQLPEQGTENFEFIGELALDGQLRPISGTLSIAIACQQAGHQLILPEANAQEASQLPNFQVFAAQHL
KQVCEHLSQNHLIQQFQPTALKASQHYKFDLADVKGQLRPRRALEIAAAGGHSLLFKGPPGTGKTLLASRLASILPPLNT
QENLEVASIYSVANHQHPFGQRPFRAPHHTASAVALVGGGSQPKPGEITLAHKGVLFLDELPEFDRKVLEVLRQPIEAKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDNRCQCSAEAIKRYQNRISGPLLDRIDLHIDVPPLHASELQDTQAVE
DSATVRERVIQAYEWQMQRQACLNMALSPKQLEQFAPLDGQAALIFEKAQQRLNLSARGYHRILRVARTIADLAQSEQIQ
TGHLTEALSYRGQHH

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=641036 LXM48_RS14035 WP_234304188.1 2866582..2868069(+) (comM) [Acinetobacter johnsonii strain DJ-Red]
ATGTCTTTTGCCAAAATTTACACTCGAGCTTTGCTCGGTTTACACGCACCTTCGGTTGAAGTTGAAGTTCATCTGAGCCA
AGGACTACCCTCTTTAACCATTGTGGGGCTTCCTGAAGCAGCCGTTCGGGAAAGCAAAGATCGGGTGCGCTCCGCCATTA
TCAATAGTGGCTTTCAGTTTCCGACCAAACGCCTCACCATCAACCTTGCACCTGCAGACCTGCCCAAAGACAGTTCACGG
TTGGATTTGCCTATTGCACTGGGTATTTTAATTGCCTCTGGTCAGCTCCCTGAGCAAGGAACTGAAAATTTTGAATTTAT
AGGTGAGTTGGCACTTGATGGGCAACTGCGACCAATTTCAGGCACTTTAAGTATTGCAATTGCCTGCCAGCAAGCTGGAC
ATCAACTGATTTTACCGGAGGCCAATGCGCAAGAAGCCTCTCAACTGCCCAACTTTCAGGTGTTTGCAGCGCAACATTTA
AAACAAGTCTGTGAGCATCTGTCGCAAAACCATCTCATCCAACAGTTTCAACCCACGGCGCTAAAAGCCTCACAGCACTA
CAAATTTGATTTGGCCGATGTTAAAGGTCAACTGCGTCCAAGACGCGCCTTAGAGATTGCGGCAGCAGGTGGTCATTCTT
TACTGTTTAAAGGACCGCCAGGGACAGGGAAAACCCTATTGGCTTCACGTTTAGCCAGTATTCTCCCACCCTTGAACACG
CAAGAGAATTTGGAAGTGGCGAGTATTTACTCGGTGGCCAATCATCAACATCCTTTTGGGCAGCGGCCATTTCGTGCACC
GCACCATACGGCTTCTGCGGTTGCCTTAGTCGGTGGCGGGTCACAACCCAAACCCGGTGAAATTACTTTGGCACATAAAG
GCGTGCTGTTTTTAGATGAACTACCAGAGTTTGACCGCAAGGTTTTAGAGGTTTTAAGACAGCCGATAGAAGCCAAAGAG
ATTGTGATTTCTCGTGCTTCACGGCAGATCACCTTTCCAGCCAATTTCCAACTGATTGCCGCAATGAACCCGTGTCCCTG
TGGTTATGCTTTTAATCAAGATAACCGTTGCCAGTGCTCAGCCGAGGCGATTAAACGCTACCAAAACCGCATTTCAGGGC
CTTTGCTGGATCGAATTGATTTACATATTGATGTACCACCCTTGCATGCTTCTGAATTGCAGGACACACAAGCCGTGGAA
GACTCGGCAACTGTACGTGAACGCGTGATTCAAGCTTATGAATGGCAAATGCAACGCCAAGCTTGTCTCAATATGGCTTT
ATCACCCAAACAACTCGAACAATTCGCACCACTCGATGGACAAGCGGCTTTAATCTTTGAAAAAGCACAGCAGCGTTTAA
ATTTGTCTGCTCGGGGTTATCATCGGATTTTAAGAGTGGCCAGAACCATTGCCGACTTAGCGCAGTCTGAACAGATTCAA
ACAGGCCACTTAACCGAAGCCCTGTCTTATCGTGGGCAACATCACTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.104

100

0.525
  comM Glaesserella parasuis strain SC1401

51.303

100

0.517
  comM Vibrio campbellii strain DS40M4

51.515

100

0.515
  comM Vibrio cholerae strain A1552

51.107

100

0.513
  comM Legionella pneumophila str. Paris

50.6

100

0.511
  comM Legionella pneumophila strain ERS1305867

50.6

100

0.511
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.941

100

0.469