Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   LXM48_RS10665 Genome accession   NZ_CP090180
Coordinates   2154766..2159244 (-) Length   1492 a.a.
NCBI ID   WP_234303901.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 2149766..2164244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS10635 (LXM48_10635) elsL 2150815..2151318 (-) 504 WP_234303899.1 cell wall-recycling L,D-carboxypeptidase ElsL -
  LXM48_RS10640 (LXM48_10640) - 2151318..2151710 (-) 393 WP_004981141.1 YbaN family protein -
  LXM48_RS10645 (LXM48_10645) - 2151808..2152686 (+) 879 WP_234303900.1 DUF1853 family protein -
  LXM48_RS10650 (LXM48_10650) - 2152844..2152990 (+) 147 WP_010326244.1 entericidin A/B family lipoprotein -
  LXM48_RS10655 (LXM48_10655) dapE 2153107..2154240 (+) 1134 WP_176537359.1 succinyl-diaminopimelate desuccinylase -
  LXM48_RS10660 (LXM48_10660) - 2154306..2154761 (-) 456 WP_078388412.1 hypothetical protein -
  LXM48_RS10665 (LXM48_10665) chpA 2154766..2159244 (-) 4479 WP_234303901.1 Hpt domain-containing protein Regulator
  LXM48_RS10670 (LXM48_10670) - 2159409..2161481 (-) 2073 WP_234303902.1 methyl-accepting chemotaxis protein -
  LXM48_RS10675 (LXM48_10675) - 2161532..2162068 (-) 537 WP_004694490.1 chemotaxis protein CheW -
  LXM48_RS10680 (LXM48_10680) - 2162074..2162442 (-) 369 WP_004694491.1 response regulator -
  LXM48_RS10685 (LXM48_10685) pilG 2162471..2162854 (-) 384 WP_004694493.1 twitching motility response regulator PilG Regulator
  LXM48_RS10690 (LXM48_10690) - 2163135..2163773 (+) 639 WP_010326240.1 hypothetical protein -

Sequence


Protein


Download         Length: 1492 a.a.        Molecular weight: 166758.32 Da        Isoelectric Point: 4.3854

>NTDB_id=641020 LXM48_RS10665 WP_234303901.1 2154766..2159244(-) (chpA) [Acinetobacter johnsonii strain DJ-Red]
MKEILKHLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVELDPLFEKWYAEPTHQETLLSIRRHFHTLKGSGRMVGAKSA
GETAWGVEDTLNRVISGAVPLTATVQKFAKTVFKLFQFKLYPTFKAVQEIDLDLRPLVLIGQQLQQNQSLEPALEELLQL
SNHLNSNDVVTGLELSDIEVAESEPQVVDVSEQDNQVHDVLEETLAIFIEEAEDHLATIDQFLNADETKVQDYNGLIRAL
HTLRGSSSMAQIEHVFNASSKVENLFKTLVQEEIVSTSKEISLLTQYAEFVRDYLHVLGRGTNEQLDVIYATFTTAWDNY
GFSIEDVDDELNPQGMVSKLIELNIDLLLDAEFEFDQRAKVEYPDYIQHLGEQAKQLLEFTNNRAAQGIHDFTFELYAGY
QALLEKPELLNVDYAYELFGQAHQEFIHLFDTLAAGQRVILTEEVHKVLNELMAFVQQDVESTSTTVIEPVAEAIVSRNT
LQPSLDLAQISQQIASDHQYKQSNTANTNFDDDLLDIFLEEAEELLMGMDQDLNTWSKNGNDTAALNNLMRYLHTLKGGA
NMISAPFIGSIAHELESIYERVIRQQIATTPQLISIIRLVQDDVADRIQVIRTDKVDYPATATINVLHNIQSLVEGTTVT
TTVSEPLVEAFVAAVEEPLSNIDRTIEVEAAAVESATAIEEPSVVDNTDVTVVEQLDTPSLVQEEAVNAVEEAASLLSIV
EETFLEEAEEILATTDGLLKQWTEQRSDRSVLLQLQRAAHSLKGGARMAENEPVGAIAYELETTFEQFAVHNFSSNVYDP
LLQTAFEWLKQAIFKRDFSNYDGLKNSLASIDYVDVIAQLPTRVTQIDLLNAVPSFEFVQGDGTEPPAMLGEWKETTHLD
GGNEMIRISADLVEKMIDLSGENAINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIAKHGSENSRYADF
DPLEMDQYSSLNQLSKSLAESASDLVDFKSTLAEKIRDAEGLLLQQSRIQAEIQESLMRTRLVPFSRMLPRLQRIVRQTA
STLNRPTELVVHNTEGELDRTILERLVTPFEHMLRNAIDHGIEDAEQRGAAKKSATGQIELNISRQGTDVIVSFKDDGKG
IDESTIKAKALNLGLIKADQVLDKQEILQFIFHPGFSTAKEVTQISGRGVGLDVVQSEIKALGGHVTVESEIGFGTTFII
RVPTTVAVSDALMVKAGDQQYAIPLAQIDRIVRIAPTALDQYFHSKDDQFKIDGVSYKLRYLSEFLSNQPIPRLSNIGHS
LPVLLIKGNSGQTIALLVDQLIGSRAQIVVKPVGQQFASIGAIAGATILGDGHVCLILDGQNIARQILSTKRVTHAADHR
DFGRHQDTRRLVMIVDDSVTVRKVTSRLLERQGFDIVTAKDGVDAMEQLESVKPDLMLLDIEMPRMDGFEVTNLVRHHEI
HQNLPIIMITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLLAEKQG

Nucleotide


Download         Length: 4479 bp        

>NTDB_id=641020 LXM48_RS10665 WP_234303901.1 2154766..2159244(-) (chpA) [Acinetobacter johnsonii strain DJ-Red]
ATGAAAGAAATATTAAAACATTTAGTTGAAACGACAACGCTTCCGGAAGATAGTTATCTAGATCAAGATGCAGAAATTCT
TGAAATTTTTGTTGAAGAAATTGAAGAAATCTTCGTTGAGTTAGATCCATTATTTGAAAAGTGGTACGCTGAACCAACCC
ATCAAGAAACCTTGTTGAGCATACGTCGTCACTTCCATACCTTAAAAGGCTCTGGTCGTATGGTGGGGGCAAAGTCAGCA
GGTGAAACAGCATGGGGGGTTGAAGATACCTTAAATCGTGTGATTTCAGGAGCTGTACCGCTCACAGCAACGGTTCAAAA
ATTTGCTAAAACAGTATTCAAACTGTTTCAATTTAAACTGTATCCGACTTTTAAAGCGGTGCAGGAAATTGATCTTGATC
TTCGTCCATTGGTTTTAATTGGACAACAATTACAACAAAATCAAAGTTTAGAACCTGCTCTAGAAGAGTTGCTACAACTG
TCTAATCATCTAAATAGTAATGATGTCGTGACGGGATTAGAGTTGAGCGATATCGAAGTGGCTGAATCTGAGCCACAAGT
TGTAGACGTTTCTGAGCAGGATAATCAAGTGCATGATGTCCTTGAAGAAACTTTAGCGATCTTCATTGAAGAAGCGGAAG
ACCATTTAGCGACTATCGATCAGTTCTTAAATGCAGATGAAACCAAAGTACAAGATTACAATGGCTTAATCCGTGCTTTA
CATACATTGCGCGGTAGTTCGTCTATGGCGCAAATTGAGCATGTTTTTAATGCCAGCTCAAAAGTCGAAAATCTATTTAA
AACCTTGGTTCAAGAAGAGATTGTTTCCACCTCGAAGGAAATATCTTTACTCACCCAATATGCTGAATTTGTACGTGACT
ATTTACATGTGCTTGGGCGTGGTACGAACGAACAGCTTGACGTGATTTATGCTACGTTCACTACGGCTTGGGATAATTAT
GGTTTCAGTATAGAAGACGTAGACGATGAACTGAACCCACAAGGTATGGTCTCGAAGCTGATCGAGTTAAATATTGATCT
ACTGCTTGATGCTGAATTTGAGTTTGATCAGCGGGCTAAAGTTGAATATCCAGACTATATTCAGCACTTAGGTGAACAAG
CAAAACAATTGCTGGAATTCACCAATAACCGTGCTGCTCAAGGAATTCATGATTTTACTTTTGAGCTATATGCAGGTTAT
CAAGCCTTACTGGAAAAGCCTGAATTACTCAATGTAGATTATGCATACGAGTTATTTGGTCAGGCACATCAAGAATTTAT
CCATTTATTTGACACTTTAGCTGCGGGTCAGCGCGTCATTCTGACTGAAGAAGTGCATAAAGTTCTGAATGAATTAATGG
CCTTCGTACAGCAAGATGTTGAATCGACTTCGACGACCGTAATTGAACCTGTTGCTGAGGCTATTGTTTCTAGAAATACT
TTACAACCAAGCCTTGATCTTGCGCAGATTTCGCAGCAAATTGCATCGGATCATCAGTACAAGCAATCGAATACGGCCAA
TACCAATTTTGATGATGATTTGCTTGATATCTTCTTGGAAGAAGCTGAAGAATTATTGATGGGGATGGATCAGGATCTTA
ATACTTGGTCTAAAAATGGCAATGATACCGCGGCACTCAATAATTTAATGCGTTATTTGCACACCTTAAAAGGTGGTGCC
AATATGATTTCTGCACCTTTTATTGGTTCGATTGCACACGAATTAGAGTCTATTTATGAGCGTGTGATTCGTCAGCAAAT
AGCCACAACGCCACAGTTGATCAGCATCATTCGCTTAGTACAGGATGACGTCGCAGACCGAATTCAGGTCATTCGTACCG
ATAAGGTTGATTATCCAGCAACAGCGACGATCAATGTACTGCATAACATTCAGAGCTTAGTTGAGGGTACGACTGTTACA
ACTACAGTATCCGAGCCTTTAGTTGAAGCGTTTGTTGCGGCAGTTGAAGAACCTTTATCTAATATAGATAGAACGATTGA
AGTTGAGGCAGCTGCGGTTGAGTCAGCAACTGCGATTGAAGAGCCGAGTGTAGTTGATAACACTGACGTTACTGTCGTTG
AACAGCTGGATACTCCGTCACTTGTCCAAGAAGAAGCAGTCAACGCTGTTGAAGAAGCAGCTAGTCTTTTATCAATTGTT
GAAGAAACCTTCTTGGAAGAAGCTGAAGAAATTTTAGCGACTACGGATGGCTTACTGAAACAGTGGACTGAACAACGTAG
TGACCGTAGTGTGTTACTACAATTGCAACGTGCTGCGCACAGCTTAAAAGGCGGCGCGCGTATGGCGGAGAATGAACCCG
TTGGTGCGATTGCTTATGAACTAGAAACCACATTTGAGCAATTTGCTGTACATAATTTCAGTTCAAACGTGTATGACCCA
TTATTGCAGACTGCATTTGAATGGTTAAAACAAGCCATCTTCAAACGTGATTTTAGTAATTATGATGGTCTGAAAAACAG
CTTAGCATCTATTGACTATGTGGATGTGATTGCGCAATTACCAACGCGTGTAACACAAATTGATTTACTTAATGCGGTAC
CAAGTTTTGAGTTTGTACAGGGTGATGGTACTGAGCCGCCAGCAATGCTGGGTGAGTGGAAAGAAACGACACACTTGGAT
GGTGGTAATGAGATGATCCGTATCTCAGCTGATTTGGTTGAGAAAATGATCGACCTGTCAGGTGAAAATGCGATTAACCG
TTCGCGTATAGAGATGGACTTAGGTCAGCTCGGCAATACGTTGAACGAGATGGAGCTTGCAATTAAACGTTTGGCGGATC
AGTTACGTCGAATGGAAGGTGAGCTTGAAAGTCAAATTATTGCGAAGCACGGTTCTGAAAACTCGCGCTACGCAGACTTT
GACCCCTTGGAAATGGACCAATACTCATCGCTCAACCAATTGTCTAAATCCTTAGCAGAATCGGCTTCGGATTTGGTCGA
TTTTAAGAGCACTTTGGCTGAGAAAATTCGTGATGCGGAAGGCTTGTTATTACAACAATCCCGTATTCAAGCGGAGATTC
AAGAAAGCTTAATGCGGACACGTTTGGTACCGTTCTCACGTATGCTGCCGCGTTTGCAACGTATTGTACGTCAGACCGCA
TCAACTTTGAACCGTCCAACGGAATTGGTCGTCCATAACACCGAAGGTGAATTAGACCGTACGATTCTTGAACGTTTGGT
TACGCCGTTTGAGCATATGCTACGTAACGCAATCGACCACGGTATTGAAGATGCGGAACAACGTGGCGCTGCGAAAAAAT
CAGCGACAGGCCAAATTGAACTGAACATTAGTCGTCAAGGTACAGATGTTATCGTCAGCTTTAAAGATGATGGTAAAGGT
ATTGATGAAAGCACGATTAAAGCGAAAGCGCTAAACCTAGGTTTAATTAAAGCCGATCAAGTGCTAGATAAACAGGAAAT
CTTACAGTTTATTTTCCATCCGGGTTTCAGTACGGCCAAAGAAGTGACGCAAATTTCTGGACGTGGTGTCGGTCTTGATG
TGGTACAAAGTGAAATTAAAGCACTGGGTGGACATGTCACGGTTGAATCGGAAATTGGTTTCGGCACAACCTTCATTATT
CGCGTACCGACTACGGTAGCGGTGAGTGATGCGTTGATGGTGAAAGCCGGTGATCAACAATATGCGATTCCATTGGCGCA
GATTGATCGTATTGTGCGTATTGCTCCAACAGCATTGGATCAGTATTTCCACAGCAAAGATGACCAATTCAAAATTGATG
GCGTGAGTTATAAATTGCGCTATTTATCTGAGTTTTTATCCAATCAGCCGATTCCGCGTTTGAGTAATATTGGACATTCA
TTGCCGGTGTTATTGATTAAAGGCAATAGTGGACAAACCATTGCCTTATTGGTTGATCAGCTCATTGGTTCACGTGCGCA
AATTGTAGTGAAGCCAGTTGGACAACAGTTTGCCAGCATTGGTGCAATTGCGGGTGCAACGATTTTGGGTGATGGCCATG
TGTGTTTGATTTTAGATGGTCAGAACATTGCACGTCAGATTTTAAGTACCAAGCGTGTGACGCATGCAGCAGATCATCGT
GACTTTGGTCGCCATCAGGATACACGTCGTTTAGTGATGATTGTGGATGACTCGGTAACGGTTCGTAAGGTCACATCGCG
CTTATTAGAGCGCCAAGGCTTTGATATTGTGACTGCAAAAGATGGTGTCGATGCGATGGAGCAGCTGGAGAGTGTTAAAC
CAGACTTGATGTTGCTGGATATTGAAATGCCACGTATGGATGGTTTTGAAGTAACGAACTTGGTTCGTCACCACGAAATT
CACCAGAACTTGCCGATTATTATGATTACATCGCGTACGGGTGAAAAACACCGTGAACGTGCTTTCAGCTTGGGCGTAAC
GCACTACATGGGCAAACCATTCCAAGAGGCAGAATTACTTGCCAACATTCAGCAGTTATTGGCTGAAAAGCAGGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.858

100

0.618