Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   LXM48_RS07790 Genome accession   NZ_CP090180
Coordinates   1586611..1587231 (-) Length   206 a.a.
NCBI ID   WP_005401158.1    Uniprot ID   A0AAW6RPI3
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1581611..1592231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS07760 (LXM48_07760) - 1581977..1582408 (-) 432 WP_004696860.1 SRPBCC family protein -
  LXM48_RS07765 (LXM48_07765) tadA 1582484..1582984 (-) 501 WP_005401161.1 tRNA adenosine(34) deaminase TadA -
  LXM48_RS07770 (LXM48_07770) - 1582990..1584111 (-) 1122 WP_234305020.1 enoyl-CoA hydratase/isomerase family protein -
  LXM48_RS07775 (LXM48_07775) ung 1584108..1584821 (-) 714 WP_004696856.1 uracil-DNA glycosylase -
  LXM48_RS07780 (LXM48_07780) - 1584863..1585459 (-) 597 WP_004696854.1 6-carboxytetrahydropterin synthase -
  LXM48_RS07785 (LXM48_07785) gspK 1585582..1586532 (-) 951 WP_234305021.1 type II secretion system minor pseudopilin GspK -
  LXM48_RS07790 (LXM48_07790) xcpW 1586611..1587231 (-) 621 WP_005401158.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LXM48_RS07795 (LXM48_07795) xcpV 1587228..1587629 (-) 402 WP_234305022.1 type II secretion system minor pseudopilin GspI Machinery gene
  LXM48_RS07800 (LXM48_07800) - 1587664..1588233 (-) 570 WP_234305023.1 type II secretion system protein -
  LXM48_RS07805 (LXM48_07805) - 1588246..1588860 (-) 615 WP_004696845.1 TetR/AcrR family transcriptional regulator -
  LXM48_RS07810 (LXM48_07810) - 1588906..1589679 (-) 774 WP_234305024.1 TatD family hydrolase -
  LXM48_RS07815 (LXM48_07815) - 1589706..1590047 (-) 342 WP_058869739.1 PilZ domain-containing protein -
  LXM48_RS07820 (LXM48_07820) - 1590062..1591045 (-) 984 WP_234305025.1 AAA family ATPase -
  LXM48_RS07825 (LXM48_07825) kdsB 1591065..1591826 (-) 762 WP_234305026.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23576.16 Da        Isoelectric Point: 5.9785

>NTDB_id=641017 LXM48_RS07790 WP_005401158.1 1586611..1587231(-) (xcpW) [Acinetobacter johnsonii strain DJ-Red]
MKKRSGFTLVELLVAIAIFAVLSALGWKVFDYLIKIKERNTQHEQRLGQLQEAYQQVLRDTVQIVPVTANVAGQVQPAVM
LQNGQLTFSKTGVTDPLMQGIPPEERVEYIYKADEKKLYRYKYKNLNQTGNDQPETSVLLDSVDQFQIMLLNPNEMAQWP
EVALSENDVTQAKILPRGLKINLTVNEVSYEWVFSLLNTDFLKQKN

Nucleotide


Download         Length: 621 bp        

>NTDB_id=641017 LXM48_RS07790 WP_005401158.1 1586611..1587231(-) (xcpW) [Acinetobacter johnsonii strain DJ-Red]
ATGAAAAAACGCTCAGGCTTTACTTTGGTTGAGTTATTGGTGGCAATCGCGATTTTTGCTGTGCTTTCAGCTTTGGGTTG
GAAGGTTTTTGATTATCTGATCAAGATTAAAGAGCGTAATACCCAACATGAACAGCGCTTAGGTCAGCTACAAGAAGCAT
ATCAACAAGTGTTACGTGACACTGTGCAAATTGTACCAGTTACTGCCAATGTTGCGGGGCAGGTTCAACCCGCAGTCATG
TTGCAAAATGGTCAGTTGACCTTTAGTAAAACTGGCGTGACTGATCCTTTAATGCAAGGCATACCGCCTGAAGAGCGAGT
TGAATATATTTACAAAGCAGATGAAAAAAAACTGTACCGTTATAAATATAAAAATTTAAATCAAACCGGTAATGATCAAC
CAGAAACCAGTGTTTTACTTGATTCAGTTGATCAATTTCAAATTATGTTACTCAATCCCAATGAAATGGCACAATGGCCT
GAGGTGGCATTGAGTGAAAATGATGTAACTCAGGCAAAAATACTACCGCGCGGTTTAAAAATAAACCTCACTGTCAATGA
AGTGAGTTATGAATGGGTGTTTAGTTTATTAAATACAGACTTTTTAAAACAAAAAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)

Type II secretion system (T2SS), protein J (T2SSJ)

(59-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

58.209

97.573

0.568