Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   LXM48_RS06605 Genome accession   NZ_CP090180
Coordinates   1346188..1347381 (+) Length   397 a.a.
NCBI ID   WP_234304912.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain DJ-Red     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1341188..1352381
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXM48_RS06595 (LXM48_06595) - 1342176..1344275 (+) 2100 WP_234304911.1 EAL domain-containing protein -
  LXM48_RS06600 (LXM48_06600) - 1344888..1345949 (+) 1062 WP_125280101.1 3-deoxy-7-phosphoheptulonate synthase -
  LXM48_RS06605 (LXM48_06605) pilU 1346188..1347381 (+) 1194 WP_234304912.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  LXM48_RS06610 (LXM48_06610) - 1347428..1348606 (-) 1179 WP_234304913.1 MFS transporter -
  LXM48_RS06615 (LXM48_06615) gcvH 1348867..1349241 (-) 375 WP_004693240.1 glycine cleavage system protein GcvH -
  LXM48_RS06620 (LXM48_06620) - 1349313..1350341 (-) 1029 WP_004979806.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 44720.09 Da        Isoelectric Point: 6.3921

>NTDB_id=641016 LXM48_RS06605 WP_234304912.1 1346188..1347381(+) (pilU) [Acinetobacter johnsonii strain DJ-Red]
MYSAELLEEARRMMFHMLSKVVEYGGSDLFISADFPPSIKHQGLMKPLGQQNLPSDQTKLFAYSLMNEKQRLEFETELEC
NFAISVPNVSRFRVNVFQQQLHVGMVIRTITAEIPNFTKLQLPTSLKDVIMEKRGLVLVVGGTGSGKSTSLAAMIDHRNE
NSAGHIITVEDPVEYVHKHKKSMITHRELGVDCHSWHNALKNTLRQAPDVILIGEIRDTETMEHAIAFAETGHLCLGTLH
ANNANQALDRIINFFPDERRNQLLMDLSSNMKAIISQRLVRTEDGRGRRAAVEIMLNTPLMSDLILKGNFHELKEVMSKS
RELGMQTFDQALFDLYNQGAIAYEEALRNADSVNELRLQIKLKSSRANPQLNSSSALSFDQAVAEKAKEAEEEKDDA

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=641016 LXM48_RS06605 WP_234304912.1 1346188..1347381(+) (pilU) [Acinetobacter johnsonii strain DJ-Red]
ATGTATTCTGCAGAACTTTTAGAAGAAGCCCGTCGAATGATGTTTCACATGCTCAGCAAAGTGGTTGAGTATGGTGGTTC
AGACTTATTTATATCTGCAGACTTTCCGCCAAGTATTAAGCATCAGGGCCTCATGAAGCCACTGGGTCAACAAAACTTAC
CATCTGATCAGACCAAACTCTTTGCTTATAGTTTAATGAACGAAAAGCAACGATTGGAGTTCGAAACTGAGCTGGAGTGT
AATTTTGCAATTAGCGTTCCCAATGTTTCACGTTTTCGCGTCAATGTTTTTCAGCAGCAACTGCATGTAGGTATGGTGAT
TCGTACGATTACTGCGGAAATTCCTAACTTCACTAAGTTACAACTTCCAACGTCTTTAAAAGACGTAATTATGGAAAAAC
GTGGTTTGGTCCTCGTTGTCGGTGGTACAGGGTCGGGTAAATCGACGTCTTTGGCAGCCATGATTGATCATCGAAATGAA
AACTCGGCAGGGCACATTATTACAGTTGAAGACCCTGTGGAGTATGTACACAAGCATAAGAAATCGATGATTACTCATCG
GGAATTGGGTGTGGACTGTCATTCTTGGCACAATGCTTTGAAAAATACTCTGCGCCAAGCGCCCGATGTCATTTTAATTG
GTGAGATTCGTGACACGGAGACGATGGAACATGCCATAGCTTTTGCGGAAACAGGCCACTTATGTCTGGGGACATTGCAC
GCCAATAATGCAAATCAAGCTTTAGATCGTATTATTAACTTTTTCCCAGACGAACGTCGTAATCAACTTTTGATGGACTT
ATCTTCCAATATGAAGGCGATTATTTCACAGCGTTTGGTGCGAACTGAAGATGGGCGTGGTCGCCGAGCAGCAGTAGAAA
TCATGCTCAATACACCGTTGATGTCAGACTTGATCCTTAAAGGGAATTTCCATGAACTCAAAGAAGTGATGTCAAAATCA
CGAGAGCTCGGTATGCAGACCTTCGACCAAGCTTTATTTGATTTATACAATCAAGGTGCAATTGCTTATGAAGAAGCGCT
GCGAAATGCAGACTCGGTCAATGAATTACGTCTACAGATTAAATTAAAGAGTAGTCGTGCTAATCCACAGTTAAACTCAA
GTAGTGCTTTGTCTTTTGATCAAGCGGTTGCCGAAAAGGCCAAAGAAGCTGAAGAAGAGAAAGACGACGCTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(122-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Pseudomonas stutzeri DSM 10701

59.053

90.428

0.534
  pilU Acinetobacter baylyi ADP1

54.545

91.436

0.499
  pilU Vibrio cholerae strain A1552

50.289

87.154

0.438
  pilT Legionella pneumophila strain Lp02

42.183

85.39

0.36
  pilT Legionella pneumophila strain ERS1305867

42.183

85.39

0.36