Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LXG94_RS24130 Genome accession   NZ_CP090179
Coordinates   2979779..2980315 (+) Length   178 a.a.
NCBI ID   WP_038898313.1    Uniprot ID   -
Organism   Vibrio harveyi strain XH2145     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2974779..2985315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXG94_RS24115 (LXG94_24115) uvrA 2974846..2977668 (-) 2823 WP_009698825.1 excinuclease ABC subunit UvrA -
  LXG94_RS24120 (LXG94_24120) galU 2977806..2978678 (-) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LXG94_RS24125 (LXG94_24125) qstR 2978840..2979484 (-) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  LXG94_RS24130 (LXG94_24130) ssb 2979779..2980315 (+) 537 WP_038898313.1 single-stranded DNA-binding protein Machinery gene
  LXG94_RS24135 (LXG94_24135) csrD 2980567..2982576 (+) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  LXG94_RS24140 (LXG94_24140) - 2982588..2984036 (+) 1449 WP_005444325.1 MSHA biogenesis protein MshI -
  LXG94_RS24145 (LXG94_24145) gspM 2984033..2984683 (+) 651 WP_005444327.1 type II secretion system protein GspM -
  LXG94_RS24150 (LXG94_24150) - 2984676..2985005 (+) 330 WP_005444329.1 hypothetical protein -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19805.85 Da        Isoelectric Point: 4.9269

>NTDB_id=640986 LXG94_RS24130 WP_038898313.1 2979779..2980315(+) (ssb) [Vibrio harveyi strain XH2145]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSESWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYV
EGQLQTRKWQDQSGQDRYSTEVVVQGFNGVMQMLGGRAQGGAPMGGGQQQQQGGWGQPQQPAQQQQYNAPQQQQQQAPQQ
QQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=640986 LXG94_RS24130 WP_038898313.1 2979779..2980315(+) (ssb) [Vibrio harveyi strain XH2145]
ATGGCCAGCCGTGGAATTAACAAAGTTATTTTGGTGGGGAATCTAGGTAACGACCCTGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAACATCACGATTGCAACTTCTGAGTCATGGCGTGATAAAGCGACTGGCGAACAGCGCGAAAAAACAG
AATGGCACCGTGTTGTGTTATTCGGCAAGCTTGCTGAAGTAGCGGGTGAGTACCTACGTAAAGGTTCTCAAGTTTACGTT
GAAGGTCAACTTCAAACTCGTAAATGGCAAGACCAAAGTGGTCAAGATCGCTACTCAACAGAAGTGGTTGTTCAAGGCTT
CAATGGCGTAATGCAAATGCTTGGCGGTCGTGCTCAAGGTGGCGCTCCAATGGGTGGCGGTCAACAACAGCAACAAGGCG
GCTGGGGTCAACCTCAACAACCGGCTCAACAGCAGCAATACAACGCTCCTCAGCAACAGCAACAACAGGCTCCGCAGCAA
CAACAGCCGCAATATAACGAGCCGCCAATGGATTTTGACGACGATATCCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

81.319

100

0.831
  ssb Glaesserella parasuis strain SC1401

57.219

100

0.601
  ssb Neisseria meningitidis MC58

46.893

99.438

0.466
  ssb Neisseria gonorrhoeae MS11

46.893

99.438

0.466