Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   LXG94_RS24125 Genome accession   NZ_CP090179
Coordinates   2978840..2979484 (-) Length   214 a.a.
NCBI ID   WP_009698824.1    Uniprot ID   A0A9X3RX18
Organism   Vibrio harveyi strain XH2145     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2973840..2984484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXG94_RS24115 (LXG94_24115) uvrA 2974846..2977668 (-) 2823 WP_009698825.1 excinuclease ABC subunit UvrA -
  LXG94_RS24120 (LXG94_24120) galU 2977806..2978678 (-) 873 WP_005444317.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LXG94_RS24125 (LXG94_24125) qstR 2978840..2979484 (-) 645 WP_009698824.1 LuxR C-terminal-related transcriptional regulator Regulator
  LXG94_RS24130 (LXG94_24130) ssb 2979779..2980315 (+) 537 WP_038898313.1 single-stranded DNA-binding protein Machinery gene
  LXG94_RS24135 (LXG94_24135) csrD 2980567..2982576 (+) 2010 WP_009698823.1 RNase E specificity factor CsrD -
  LXG94_RS24140 (LXG94_24140) - 2982588..2984036 (+) 1449 WP_005444325.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24591.43 Da        Isoelectric Point: 8.7703

>NTDB_id=640985 LXG94_RS24125 WP_009698824.1 2978840..2979484(-) (qstR) [Vibrio harveyi strain XH2145]
MKKSAYARKLFLISMEDDAEKKVEALVKYTDIDIPVISTQALMEANPKHRNKILLIDFSEHKTLVQSIKNLPLIWKNFET
VIFNVPKRLTTDELLSFGQLKGVFYQEDSLEQVGEGLREIVNGQNWLPRNVTSQLLHYYRNVLSTHTAPATVDLTIRELQ
VLRCLQAGASNNQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLLS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=640985 LXG94_RS24125 WP_009698824.1 2978840..2979484(-) (qstR) [Vibrio harveyi strain XH2145]
GTGAAAAAATCAGCTTATGCGAGAAAATTGTTTTTGATCAGTATGGAAGACGACGCAGAGAAAAAAGTCGAAGCACTCGT
GAAATACACTGATATTGATATCCCTGTCATCTCCACACAAGCACTGATGGAAGCCAATCCAAAGCATCGCAATAAAATCC
TGTTGATTGACTTTAGTGAACATAAAACACTCGTACAATCGATCAAAAACTTGCCTTTAATTTGGAAGAATTTTGAAACG
GTCATATTCAATGTTCCTAAACGCTTAACCACCGATGAGTTGTTGTCTTTTGGGCAACTAAAAGGCGTATTTTATCAGGA
AGACTCTCTAGAGCAGGTAGGTGAAGGCTTGAGAGAAATCGTGAATGGTCAGAACTGGTTGCCAAGAAATGTCACTAGTC
AATTGCTTCACTATTATCGCAATGTCCTCAGCACGCACACCGCCCCAGCAACCGTGGACTTAACCATCCGTGAGTTGCAA
GTTTTACGTTGTCTTCAAGCAGGAGCATCTAACAATCAAATGGCAGAAGAATTGTTCGTCAGTGAATTCACCATTAAATC
TCACCTTTATCAGATATTCAAAAAGCTCTCCGTAAAGAATCGCGTTCAAGCTATCGCTTGGGCAGACCAAAACCTGTTGT
CATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

92.991

100

0.93
  qstR Vibrio parahaemolyticus RIMD 2210633

88.785

100

0.888
  qstR Vibrio cholerae strain A1552

52.336

100

0.523