Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LXG94_RS22805 Genome accession   NZ_CP090179
Coordinates   2694168..2695691 (+) Length   507 a.a.
NCBI ID   WP_038897974.1    Uniprot ID   -
Organism   Vibrio harveyi strain XH2145     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2689168..2700691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXG94_RS22790 (LXG94_22790) ilvE 2690811..2691749 (-) 939 WP_005451015.1 branched-chain-amino-acid transaminase -
  LXG94_RS22795 (LXG94_22795) ilvM 2691762..2692046 (-) 285 WP_005440786.1 acetolactate synthase 2 small subunit -
  LXG94_RS22800 (LXG94_22800) ilvG 2692058..2693704 (-) 1647 WP_038897973.1 acetolactate synthase 2 catalytic subunit -
  LXG94_RS22805 (LXG94_22805) comM 2694168..2695691 (+) 1524 WP_038897974.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LXG94_RS22810 (LXG94_22810) - 2695694..2696527 (-) 834 WP_038897975.1 GGDEF domain-containing protein -
  LXG94_RS22815 (LXG94_22815) - 2696677..2697633 (-) 957 WP_017190999.1 DUF2860 domain-containing protein -
  LXG94_RS22820 (LXG94_22820) - 2697798..2698676 (+) 879 WP_005451002.1 acyltransferase -
  LXG94_RS22825 (LXG94_22825) - 2698719..2699321 (-) 603 WP_005451000.1 thiol:disulfide interchange protein DsbA/DsbL -
  LXG94_RS22830 (LXG94_22830) - 2699356..2700342 (-) 987 WP_005450998.1 serine/threonine protein kinase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54982.98 Da        Isoelectric Point: 9.2602

>NTDB_id=640976 LXG94_RS22805 WP_038897974.1 2694168..2695691(+) (comM) [Vibrio harveyi strain XH2145]
MGLAIIHSRASVGVQAPSVSVEVHISNGMPGFTLVGLPETTVKESKDRVRSAIVNSNFQFPAKRITVNLAPADLPKEGGR
FDLPIALGILAASEQIATDKLKNYEFVGELALSGGLRPVKGVLPAALAANKKQRRLVVPHANGDQAALVGKEQHKSAQSL
LEVCAELCGQHQLNLYQTPKKKETKTHGRDLQDIIGQQQGKRALEIAAAGNHNLLFLGPPGTGKTMLASRLCDLLPEMSD
EEAMETASVASLTQSEINEHNWKTRPFRAPHHSSSMAALVGGGSVPRPGEISLAHNGLLFLDEMPEFDRKVLDSLREPLE
SGEIIISRAQGKTRFPARFQLVGALNPSPTGYYEGNQARTNPQAILRYLGRLSGPLLDRFDMSLEILALPKGTLSEGGDR
GEPTAAVKERVNQARNDMLNRSGKVNALLGSREIEAFCPLQKSDAEFLENALHRLGLSIRAYHRIIKVARTIADLEGSPQ
IERTHLAEALGYRAMDRLLKQLTAQAV

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=640976 LXG94_RS22805 WP_038897974.1 2694168..2695691(+) (comM) [Vibrio harveyi strain XH2145]
ATGGGGCTGGCAATCATTCATAGTCGAGCAAGTGTGGGTGTGCAAGCGCCGTCGGTAAGCGTGGAAGTCCACATCAGCAA
TGGGATGCCGGGGTTTACGCTGGTGGGTCTACCGGAAACCACAGTAAAAGAATCGAAAGATCGTGTCCGAAGTGCGATCG
TTAATTCCAATTTTCAGTTTCCAGCAAAACGAATTACGGTCAATTTGGCTCCTGCTGACTTGCCCAAAGAAGGTGGGCGC
TTTGATCTGCCGATTGCATTAGGGATTTTGGCTGCTTCAGAACAAATCGCGACAGATAAGCTCAAAAACTACGAATTTGT
TGGTGAATTAGCCCTTTCTGGAGGGCTGAGACCTGTAAAAGGCGTGCTACCTGCTGCGTTGGCTGCGAACAAAAAACAGC
GTCGTTTAGTGGTGCCTCATGCGAATGGTGATCAAGCGGCATTAGTGGGTAAAGAGCAGCATAAATCAGCCCAATCGTTA
CTGGAAGTGTGTGCTGAGCTTTGTGGTCAGCATCAATTGAATTTATATCAAACCCCGAAGAAAAAAGAGACCAAAACGCA
CGGTCGTGATTTACAAGACATCATTGGTCAACAACAAGGTAAACGCGCTTTAGAAATTGCTGCGGCTGGCAATCACAACC
TACTTTTTCTTGGTCCTCCAGGTACAGGTAAAACCATGTTGGCATCACGGCTATGTGATTTATTGCCAGAGATGAGCGAT
GAAGAAGCCATGGAAACCGCTTCTGTGGCGTCGCTGACTCAAAGTGAAATCAATGAACACAATTGGAAGACGCGACCGTT
CCGCGCTCCGCACCATTCCAGCTCAATGGCTGCTTTAGTCGGAGGTGGCTCAGTACCAAGACCGGGCGAGATATCTCTAG
CCCATAATGGGTTGTTGTTTTTAGATGAGATGCCGGAGTTTGACCGTAAGGTGCTCGATTCTTTGCGAGAGCCTTTGGAG
TCAGGAGAAATTATTATCTCTAGAGCGCAAGGTAAAACGCGCTTTCCTGCTCGATTCCAATTGGTTGGTGCATTAAACCC
CAGTCCGACAGGATATTATGAAGGGAATCAAGCACGGACGAATCCACAAGCTATTTTGCGCTACCTTGGACGTTTATCAG
GTCCGCTTCTAGATCGTTTTGACATGTCGCTGGAAATTCTTGCTTTGCCGAAAGGCACATTATCTGAAGGGGGCGATCGA
GGGGAACCAACAGCGGCGGTCAAGGAACGAGTAAATCAAGCACGCAATGATATGCTCAATCGCAGCGGTAAGGTTAATGC
ACTGTTGGGCAGTCGAGAGATTGAAGCGTTTTGCCCGCTACAAAAAAGCGATGCCGAGTTTCTAGAGAACGCTTTGCACC
GCTTGGGATTGTCGATTCGCGCGTATCACCGCATCATCAAAGTTGCGCGTACTATCGCTGATCTGGAAGGTTCACCACAA
ATTGAACGAACTCACCTTGCAGAAGCATTGGGGTATCGAGCGATGGATAGATTACTCAAACAGTTGACGGCGCAGGCAGT
ATAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

98.028

100

0.98
  comM Vibrio cholerae strain A1552

85.01

100

0.85
  comM Haemophilus influenzae Rd KW20

65.878

100

0.659
  comM Glaesserella parasuis strain SC1401

64.118

100

0.645
  comM Legionella pneumophila str. Paris

50

98.225

0.491
  comM Legionella pneumophila strain ERS1305867

50

98.225

0.491
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.118

100

0.444