Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I533_RS01060 Genome accession   NC_023045
Coordinates   230860..231444 (+) Length   194 a.a.
NCBI ID   WP_024015516.1    Uniprot ID   -
Organism   Alteromonas mediterranea MED64     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 225860..236444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I533_RS01045 (I533_01045) - 226497..227552 (+) 1056 WP_024015513.1 UDP-glucose--hexose-1-phosphate uridylyltransferase -
  I533_RS01050 (I533_01050) galK 227545..228693 (+) 1149 WP_024015514.1 galactokinase -
  I533_RS01055 (I533_01055) - 229030..230592 (+) 1563 WP_024015515.1 sodium/sugar symporter -
  I533_RS01060 (I533_01060) ssb 230860..231444 (+) 585 WP_024015516.1 single-stranded DNA-binding protein Machinery gene
  I533_RS19950 (I533_01065) - 231653..232294 (+) 642 WP_024015517.1 hypothetical protein -
  I533_RS01070 (I533_01070) - 232822..235398 (-) 2577 WP_024015518.1 hypothetical protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 21165.06 Da        Isoelectric Point: 5.2494

>NTDB_id=64067 I533_RS01060 WP_024015516.1 230860..231444(+) (ssb) [Alteromonas mediterranea MED64]
MATKGVNKVILVGNLGNDPEVRYMPNGNAVANLSLATSESWKDQQGQVQERTEWHRLTMYRRLAEIAGEYLKKGSQIYVE
GKLQTRKWQDQQGQDRYTTEIIVDQMQMLGGRGGEGGGGNGGYQRPQNNQGGYNQAPAHGGYNQAPQQGGGQQGGYNSNQ
GGGYNQAPQGGNQGQPKNPPMAEPDFDFDDDIPF

Nucleotide


Download         Length: 585 bp        

>NTDB_id=64067 I533_RS01060 WP_024015516.1 230860..231444(+) (ssb) [Alteromonas mediterranea MED64]
ATGGCAACGAAAGGCGTTAATAAGGTTATTCTTGTTGGAAACCTTGGCAATGATCCTGAAGTTAGATACATGCCTAACGG
AAACGCCGTTGCGAACTTAAGCCTAGCAACTAGCGAAAGCTGGAAAGACCAACAGGGTCAGGTTCAAGAGCGCACTGAGT
GGCACCGCCTTACAATGTACCGTCGCTTAGCAGAAATTGCCGGAGAGTACCTGAAAAAGGGCTCGCAAATTTATGTTGAA
GGTAAATTGCAGACGCGTAAGTGGCAAGATCAACAAGGCCAAGATAGATACACCACTGAAATTATCGTAGACCAAATGCA
AATGCTTGGTGGTCGCGGTGGTGAAGGTGGCGGCGGTAACGGTGGTTACCAACGTCCTCAAAACAACCAAGGTGGTTACA
ATCAAGCTCCAGCGCATGGCGGCTATAACCAAGCGCCACAGCAAGGTGGTGGTCAGCAGGGCGGCTACAACTCAAACCAA
GGTGGTGGCTACAATCAAGCGCCTCAGGGTGGCAATCAAGGTCAGCCAAAGAACCCACCAATGGCTGAGCCAGATTTTGA
CTTCGACGATGACATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

56

100

0.577
  ssb Vibrio cholerae strain A1552

54.5

100

0.562
  ssb Neisseria meningitidis MC58

46.875

98.969

0.464
  ssb Neisseria gonorrhoeae MS11

46.875

98.969

0.464

Multiple sequence alignment