Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LXF01_RS01010 Genome accession   NZ_CP090067
Coordinates   217754..219244 (-) Length   496 a.a.
NCBI ID   WP_233944909.1    Uniprot ID   -
Organism   Acinetobacter sp. SH20PTE14     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 212754..224244
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF01_RS00990 (LXF01_00990) ppa 213116..213652 (+) 537 WP_078189469.1 inorganic diphosphatase -
  LXF01_RS00995 (LXF01_00995) - 213756..215090 (-) 1335 WP_180039912.1 OprD family outer membrane porin -
  LXF01_RS01000 (LXF01_01000) - 215806..216582 (+) 777 WP_233944905.1 TorF family putative porin -
  LXF01_RS01005 (LXF01_01005) - 216979..217710 (+) 732 WP_233944907.1 TorF family putative porin -
  LXF01_RS01010 (LXF01_01010) comM 217754..219244 (-) 1491 WP_233944909.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LXF01_RS01015 (LXF01_01015) - 219311..219538 (-) 228 WP_078189551.1 accessory factor UbiK family protein -
  LXF01_RS01020 (LXF01_01020) glnK 219817..220155 (+) 339 WP_067763174.1 P-II family nitrogen regulator -
  LXF01_RS01025 (LXF01_01025) - 220217..221608 (+) 1392 WP_078189464.1 ammonium transporter -
  LXF01_RS01030 (LXF01_01030) nrdR 221747..222205 (+) 459 WP_067763170.1 transcriptional regulator NrdR -
  LXF01_RS01035 (LXF01_01035) ribD 222242..223345 (+) 1104 WP_233944910.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54007.74 Da        Isoelectric Point: 7.4579

>NTDB_id=640523 LXF01_RS01010 WP_233944909.1 217754..219244(-) (comM) [Acinetobacter sp. SH20PTE14]
MSFAKIYTRGLLGLNAPQIEVEVHVSQGLPSLTIVGLPEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLAIALGILIASGQLPENAADGFEFIGELALDGYLRPVSGILSIAIACQHIGHHLILPALNADEAAQLPEFHVFPAQHL
KDVCEHLSRSALISSHPSTSSTNQLSYPFDLSDVKGQLRPRRALEIAAAGGHSLLFRGPPGTGKTLLASRLPSILPPLDM
QENLQVASIYSIAGANHHFGQRPFRAPHHTASAIALVGGGSNPKPGEITLAHLGVLFLDELPEFDRKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAESIKRYQNRISGPLLDRIDLHIDVPPLAAHELQSSQEVE
SSSAVRHRVIQAYALQIERQQKSNMALTPTQLEQQAVLDATAQNILQLAQQRMNLSARAYHRVLRVARTIADLAQSEHIQ
AQHVSEALSYRSQLNA

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=640523 LXF01_RS01010 WP_233944909.1 217754..219244(-) (comM) [Acinetobacter sp. SH20PTE14]
ATGTCTTTTGCCAAAATCTATACTCGGGGTTTGCTCGGCTTAAATGCACCCCAAATTGAAGTTGAAGTTCATGTCAGCCA
AGGCCTACCTTCATTGACCATTGTGGGCCTACCTGAGGCCGCTGTCCGTGAAAGTAAAGACCGTGTCCGCTCTGCGATTA
TTAATAGCGGCTTTCAGTTTCCGACCAAACGTCTGACCATTAATCTAGCACCCGCAGATTTACCCAAAGATGGTTCACGT
TTAGATCTCGCCATTGCTTTAGGGATTCTGATCGCGTCGGGACAACTTCCTGAAAATGCAGCAGATGGCTTTGAATTTAT
TGGAGAATTGGCACTTGATGGTTATTTACGACCTGTCAGTGGCATCTTAAGTATAGCCATTGCCTGTCAGCATATCGGGC
ATCATCTGATTCTACCGGCACTCAATGCCGATGAAGCGGCGCAACTGCCGGAGTTCCATGTTTTTCCTGCACAGCATCTT
AAGGATGTATGTGAACATTTGAGTCGTTCGGCCTTAATCAGTAGCCATCCCTCGACATCGTCAACCAATCAACTCAGTTA
CCCTTTTGATTTATCTGATGTGAAAGGTCAACTCAGACCACGTCGTGCTTTAGAAATTGCAGCGGCTGGCGGTCATTCTC
TACTATTTCGGGGTCCACCGGGCACAGGCAAAACTCTACTCGCCTCGCGTTTGCCCAGTATTCTGCCCCCCTTAGATATG
CAAGAAAATTTGCAAGTCGCGAGTATTTATTCCATTGCAGGTGCAAATCATCATTTTGGGCAGCGTCCATTTCGTGCGCC
ACACCATACCGCATCTGCGATTGCCCTCGTCGGTGGAGGATCAAATCCTAAACCGGGTGAAATCACCTTGGCACATTTAG
GAGTTTTATTTTTAGATGAGCTGCCTGAATTTGATCGAAAGGTGTTGGAGGTGTTACGGCAACCACTCGAATCCAAAGAA
ATTGTGATTTCACGGGCTTCTCGTCAAATCACCTTCCCTGCAAATTTTCAACTAATTGCGGCGATGAATCCTTGCCCATG
TGGCTATGCCTTTAACCAAGACAGCCGCTGTCAATGTAGTGCTGAAAGTATTAAACGCTATCAAAACCGTATTTCAGGTC
CATTATTAGATCGAATTGACTTACATATAGATGTCCCGCCACTGGCAGCGCATGAATTACAAAGTTCGCAAGAGGTTGAA
AGTTCAAGTGCGGTTAGGCATCGTGTTATACAAGCTTATGCGTTACAAATAGAACGTCAGCAAAAATCCAATATGGCGCT
CACGCCTACGCAATTGGAGCAACAAGCAGTTTTGGATGCTACTGCACAGAATATTTTACAGTTAGCCCAGCAACGAATGA
ATTTATCTGCGCGCGCCTATCATCGCGTATTACGTGTGGCTAGAACCATTGCCGACTTGGCTCAAAGTGAACACATTCAA
GCTCAACACGTTTCTGAAGCACTGTCCTATCGAAGCCAACTCAATGCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.806

100

0.508
  comM Legionella pneumophila str. Paris

49.4

100

0.498
  comM Legionella pneumophila strain ERS1305867

49.4

100

0.498
  comM Haemophilus influenzae Rd KW20

49.203

100

0.498
  comM Glaesserella parasuis strain SC1401

48.8

100

0.492
  comM Vibrio campbellii strain DS40M4

48.79

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.743

100

0.466