Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LW347_RS01055 Genome accession   NZ_CP090065
Coordinates   227333..228859 (-) Length   508 a.a.
NCBI ID   WP_258883750.1    Uniprot ID   A0AAE9NP70
Organism   Pectobacterium polonicum strain BY21311     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 222333..233859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW347_RS01030 (LW347_01030) ytfR 222487..224007 (+) 1521 WP_258883748.1 galactofuranose ABC transporter, ATP-binding protein YtfR -
  LW347_RS01035 (LW347_01035) ytfT 223994..225004 (+) 1011 WP_137742457.1 galactofuranose ABC transporter, ATP-binding protein YtfT -
  LW347_RS01040 (LW347_01040) yjfF 225004..225966 (+) 963 WP_137742456.1 galactofuranose ABC transporter, permease protein YjfF -
  LW347_RS01045 (LW347_01045) hdfR 225989..226816 (-) 828 WP_258883749.1 HTH-type transcriptional regulator HdfR -
  LW347_RS01050 (LW347_01050) - 226937..227275 (+) 339 WP_014701822.1 DUF413 domain-containing protein -
  LW347_RS01055 (LW347_01055) comM 227333..228859 (-) 1527 WP_258883750.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LW347_RS01060 (LW347_01060) - 228826..229059 (-) 234 WP_137742453.1 hypothetical protein -
  LW347_RS01065 (LW347_01065) ilvL 229265..229363 (+) 99 WP_071531109.1 ilv operon leader peptide -
  LW347_RS01070 (LW347_01070) ilvG 229504..231150 (+) 1647 WP_137742452.1 acetolactate synthase 2 catalytic subunit -
  LW347_RS01075 (LW347_01075) ilvM 231208..231468 (+) 261 WP_258883751.1 acetolactate synthase 2 small subunit -
  LW347_RS01080 (LW347_01080) - 231493..232419 (+) 927 WP_137742451.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 55478.08 Da        Isoelectric Point: 6.9625

>NTDB_id=640491 LW347_RS01055 WP_258883750.1 227333..228859(-) (comM) [Pectobacterium polonicum strain BY21311]
MSLAVTYTRAMIGVQAPDVYIEVHISSGLPALTLVGLPETTVKEARDRVRSALINCGFTFPAKRITVNLAPADLPKEGGR
YDLPIALAILAASEQIDGEKLSRYEFLGELGLSGTLRGVNGAIPAALEAIKSGRQLILPDDNKREMTLIPQGEALMAGHL
LEVCAFLSGEEELLSCSTITPVTQAGEDTLDLKDIIGQEQAKRALEIAAAGGHNLLLLGPPGTGKTMRASRLGNLMPPLS
DEEALESAAINSLVNIDATMTRWRARPFRAPHHSSSMAALVGGGSLPKPGEISLAHNGVLFLDELPEFERRVLDSLREPL
ESGEIIISRTRAKVCYPARVQLVAAMNPSPSGHYQGIHNRLPAQQILRYLSKLSGPFLDRFDLSIEVPLLPPGVLSQQHY
QGENSATIRERVLIARQIQLKRANKINALLTSREIEKHCALEPPDAAYLEEVMNKLGLSVRAWHRILKVARTIADLGDRD
NIERKHLAEALSYRCMDRLLIQLHKSLE

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=640491 LW347_RS01055 WP_258883750.1 227333..228859(-) (comM) [Pectobacterium polonicum strain BY21311]
ATGTCATTGGCAGTTACCTATACTCGGGCAATGATTGGTGTACAAGCACCGGACGTTTACATCGAAGTTCACATCAGCAG
CGGGCTGCCCGCTTTAACGCTGGTAGGCTTACCAGAAACCACCGTGAAGGAAGCGCGCGATCGCGTGCGCAGCGCACTCA
TCAATTGCGGATTTACCTTTCCAGCAAAGCGCATCACGGTCAATCTCGCTCCCGCAGACCTGCCAAAAGAAGGGGGACGC
TACGATCTACCGATTGCTCTGGCGATTCTAGCGGCATCAGAACAAATCGATGGCGAAAAGCTAAGCCGCTACGAGTTTCT
TGGCGAACTCGGCCTGTCTGGCACCTTACGTGGCGTCAATGGCGCGATTCCCGCCGCATTAGAAGCCATAAAATCAGGCC
GTCAGCTTATCCTGCCAGATGACAATAAACGGGAGATGACGCTGATACCGCAGGGTGAAGCGCTGATGGCTGGTCATCTG
CTAGAGGTGTGTGCTTTTCTCAGTGGAGAAGAGGAACTGCTAAGCTGTTCCACTATCACACCCGTTACACAGGCAGGGGA
AGATACGCTAGACCTGAAGGATATTATCGGTCAGGAGCAAGCTAAACGCGCATTGGAAATCGCGGCGGCAGGTGGCCACA
ATCTGCTATTGCTAGGGCCACCGGGAACAGGGAAAACGATGCGGGCGAGTCGGCTAGGCAATCTGATGCCGCCATTGAGC
GATGAAGAAGCATTAGAAAGCGCCGCTATCAACAGCCTGGTCAACATTGATGCCACCATGACGCGCTGGCGAGCCAGACC
CTTCAGAGCACCTCACCATAGTTCTTCTATGGCGGCACTCGTAGGCGGGGGCTCGCTGCCCAAACCCGGAGAAATCTCAC
TCGCCCACAACGGTGTACTATTTTTGGATGAATTACCAGAGTTTGAGCGACGCGTCTTAGACTCGCTGCGAGAACCTCTG
GAATCTGGTGAAATTATCATTTCTCGTACCCGAGCCAAAGTGTGCTATCCGGCACGCGTTCAGCTCGTCGCCGCGATGAA
TCCCAGCCCGTCAGGGCATTATCAAGGTATTCATAACCGATTGCCGGCCCAACAGATACTGCGCTATCTCAGTAAGCTCT
CCGGTCCCTTCTTGGATCGCTTTGACCTTTCGATCGAAGTTCCTTTACTGCCACCTGGCGTGTTATCTCAGCAACATTAT
CAAGGGGAAAATAGCGCGACGATTCGCGAACGCGTACTGATCGCACGACAGATACAGCTGAAGCGGGCAAATAAAATCAA
CGCGCTGCTAACTTCACGCGAAATAGAAAAACACTGTGCGTTAGAGCCACCTGATGCGGCTTACCTGGAAGAAGTGATGA
ACAAACTTGGCTTATCCGTACGCGCCTGGCACAGGATATTGAAAGTCGCACGCACGATCGCTGACCTTGGCGATCGGGAC
AACATTGAGAGAAAGCATCTTGCCGAAGCGCTGAGCTACCGTTGTATGGATCGATTACTCATCCAGCTCCATAAAAGCCT
TGAATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

64.427

99.606

0.642
  comM Vibrio cholerae strain A1552

63.817

99.016

0.632
  comM Glaesserella parasuis strain SC1401

62.451

100

0.632
  comM Vibrio campbellii strain DS40M4

62.624

99.016

0.62
  comM Legionella pneumophila str. Paris

50.905

97.835

0.498
  comM Legionella pneumophila strain ERS1305867

50.905

97.835

0.498
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.109

100

0.467