Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LWM38_RS12430 Genome accession   NZ_CP090019
Coordinates   2780899..2781462 (-) Length   187 a.a.
NCBI ID   WP_017055929.1    Uniprot ID   A0A109DAW8
Organism   Vibrio kanaloae strain KH-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2775899..2786462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWM38_RS12410 (LWM38_12410) - 2776291..2776623 (-) 333 WP_017055933.1 hypothetical protein -
  LWM38_RS12415 (LWM38_12415) pilO 2776616..2777263 (-) 648 WP_233893993.1 type 4a pilus biogenesis protein PilO -
  LWM38_RS12420 (LWM38_12420) - 2777263..2778705 (-) 1443 WP_046224490.1 MSHA biogenesis protein MshI -
  LWM38_RS12425 (LWM38_12425) csrD 2778708..2780723 (-) 2016 WP_046224489.1 RNase E specificity factor CsrD -
  LWM38_RS12430 (LWM38_12430) ssb 2780899..2781462 (-) 564 WP_017055929.1 single-stranded DNA-binding protein Machinery gene
  LWM38_RS12435 (LWM38_12435) qstR 2781741..2782388 (+) 648 WP_233893995.1 LuxR C-terminal-related transcriptional regulator Regulator
  LWM38_RS12440 (LWM38_12440) galU 2782549..2783421 (+) 873 WP_077679908.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LWM38_RS12445 (LWM38_12445) uvrA 2783571..2786402 (+) 2832 WP_233894004.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20632.76 Da        Isoelectric Point: 5.2358

>NTDB_id=640264 LWM38_RS12430 WP_017055929.1 2780899..2781462(-) (ssb) [Vibrio kanaloae strain KH-4]
MASRGVNKVILVGNLGNDPEIRYMPSGSAVANITIATSESWRDKATGEQREKTEWHRVALFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQDQSGQDRYTTEVVVQGFNGVMQMLGGRAQGGAPAQGGMGNQQQGGWGQPQQPQQQQQSQQQYSAPAQQQP
KAPQQAPQQAQPQYNEPPMDFDDDIPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=640264 LWM38_RS12430 WP_017055929.1 2780899..2781462(-) (ssb) [Vibrio kanaloae strain KH-4]
ATGGCTAGCCGTGGAGTTAACAAAGTTATATTAGTGGGTAACCTAGGTAATGACCCTGAAATTCGTTACATGCCAAGTGG
CAGTGCTGTAGCGAACATTACCATTGCAACGTCAGAGTCATGGCGTGACAAAGCAACTGGCGAACAGCGTGAAAAAACAG
AATGGCACCGTGTTGCTCTGTTTGGAAAGCTGGCGGAAGTTGCTGGTGAATACCTGCGCAAAGGGTCTCAAGTTTACATT
GAAGGTCAACTTCAGACTCGTAAATGGCAAGATCAAAGCGGTCAAGATCGCTACACGACTGAAGTGGTTGTTCAAGGGTT
CAACGGTGTCATGCAAATGCTTGGTGGTCGTGCTCAAGGCGGTGCTCCTGCTCAAGGTGGTATGGGTAACCAACAGCAAG
GTGGTTGGGGTCAACCACAGCAGCCACAACAACAGCAGCAATCACAACAACAGTACAGTGCTCCTGCTCAACAGCAGCCT
AAAGCACCCCAACAAGCTCCTCAGCAGGCTCAACCTCAATATAATGAGCCGCCAATGGATTTTGATGATGACATCCCATT
TTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A109DAW8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

79.894

100

0.807
  ssb Glaesserella parasuis strain SC1401

56.085

100

0.567
  ssb Neisseria meningitidis MC58

45.455

100

0.455
  ssb Neisseria gonorrhoeae MS11

45.455

100

0.455