Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   LWM38_RS12435 Genome accession   NZ_CP090019
Coordinates   2781741..2782388 (+) Length   215 a.a.
NCBI ID   WP_233893995.1    Uniprot ID   -
Organism   Vibrio kanaloae strain KH-4     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2776741..2787388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWM38_RS12420 (LWM38_12420) - 2777263..2778705 (-) 1443 WP_046224490.1 MSHA biogenesis protein MshI -
  LWM38_RS12425 (LWM38_12425) csrD 2778708..2780723 (-) 2016 WP_046224489.1 RNase E specificity factor CsrD -
  LWM38_RS12430 (LWM38_12430) ssb 2780899..2781462 (-) 564 WP_017055929.1 single-stranded DNA-binding protein Machinery gene
  LWM38_RS12435 (LWM38_12435) qstR 2781741..2782388 (+) 648 WP_233893995.1 LuxR C-terminal-related transcriptional regulator Regulator
  LWM38_RS12440 (LWM38_12440) galU 2782549..2783421 (+) 873 WP_077679908.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  LWM38_RS12445 (LWM38_12445) uvrA 2783571..2786402 (+) 2832 WP_233894004.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 24973.23 Da        Isoelectric Point: 10.0850

>NTDB_id=640265 LWM38_RS12435 WP_233893995.1 2781741..2782388(+) (qstR) [Vibrio kanaloae strain KH-4]
MRKSRYARTLHFLCIVPSDTHLHIKAIEKHLSIPLYKMTTDDLMLVDRKQSNRILLVDYKAVPQLLAIFPNLYVIWKNNE
ILLFNVPQPLPTSELLNYGVLKGLFYDSEKKIKIAKGLREVIDGDNWLPRKVTNQLLFYYRNMVNTNTTPTNVDLTIREI
QVIRCLQSGSSNTQIADDLFISEFTVKSHLYQIFRKLAVKNRVQAIAWANQNLLA

Nucleotide


Download         Length: 648 bp        

>NTDB_id=640265 LWM38_RS12435 WP_233893995.1 2781741..2782388(+) (qstR) [Vibrio kanaloae strain KH-4]
ATGAGAAAATCTCGATATGCTCGCACTTTACACTTTCTGTGCATCGTTCCCAGCGACACTCACCTACACATAAAAGCGAT
AGAAAAGCATTTGTCTATTCCTCTCTACAAAATGACAACGGACGATTTGATGCTGGTAGATAGGAAACAGAGCAACCGTA
TTCTACTCGTCGATTACAAAGCGGTTCCACAATTACTTGCCATATTCCCTAACTTGTACGTTATATGGAAAAATAATGAG
ATCCTTTTATTTAATGTTCCGCAGCCGCTTCCTACCTCGGAGCTCCTTAACTATGGCGTACTAAAAGGGTTATTTTATGA
TTCCGAGAAAAAAATCAAAATAGCAAAAGGTCTTCGAGAGGTCATTGATGGTGATAACTGGTTACCGAGAAAGGTAACGA
ACCAACTGCTGTTTTATTACCGCAACATGGTCAACACCAACACAACACCCACTAATGTCGATTTAACCATCCGAGAGATC
CAAGTTATTCGCTGTCTTCAATCAGGTTCATCAAACACTCAGATAGCCGATGATTTATTTATTAGCGAGTTCACCGTCAA
ATCTCATCTCTATCAGATATTTCGCAAGTTAGCGGTTAAAAATAGAGTCCAAGCCATTGCTTGGGCAAATCAGAACTTAC
TTGCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

54.419

100

0.544
  qstR Vibrio parahaemolyticus RIMD 2210633

53.023

100

0.53
  qstR Vibrio cholerae strain A1552

48.598

99.535

0.484