Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LVD17_RS09955 Genome accession   NZ_CP089981
Coordinates   2405990..2406436 (+) Length   148 a.a.
NCBI ID   WP_255702577.1    Uniprot ID   -
Organism   Fulvivirga ulvae strain SS9-22     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2400990..2411436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVD17_RS09930 (LVD17_09930) - 2401123..2401614 (+) 492 WP_233766451.1 DUF5958 family protein -
  LVD17_RS09935 (LVD17_09935) - 2401734..2403293 (-) 1560 WP_233766452.1 Rne/Rng family ribonuclease -
  LVD17_RS09940 (LVD17_09940) - 2403521..2404354 (-) 834 WP_233766453.1 lipopolysaccharide assembly protein LapB -
  LVD17_RS09945 (LVD17_09945) - 2404421..2404723 (-) 303 WP_202857020.1 HU family DNA-binding protein -
  LVD17_RS09950 (LVD17_09950) mutY 2404869..2405939 (+) 1071 WP_233766454.1 A/G-specific adenine glycosylase -
  LVD17_RS09955 (LVD17_09955) ssb 2405990..2406436 (+) 447 WP_255702577.1 single-stranded DNA-binding protein Machinery gene
  LVD17_RS09960 (LVD17_09960) gldE 2406468..2407811 (+) 1344 WP_233767946.1 gliding motility-associated protein GldE -
  LVD17_RS09965 (LVD17_09965) gldD 2407783..2408397 (+) 615 WP_233766456.1 gliding motility lipoprotein GldD -
  LVD17_RS09970 (LVD17_09970) recG 2408432..2410525 (+) 2094 WP_233766458.1 ATP-dependent DNA helicase RecG -
  LVD17_RS09975 (LVD17_09975) tpiA 2410578..2411339 (+) 762 WP_233766460.1 triose-phosphate isomerase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16282.16 Da        Isoelectric Point: 4.7276

>NTDB_id=639671 LVD17_RS09955 WP_255702577.1 2405990..2406436(+) (ssb) [Fulvivirga ulvae strain SS9-22]
MSGVNKVIIVGRLGKDPEVRHLESGASVANFPVATSEVYKDRNTGERREQTEWHNVVLWRGLAEIAEKYLNKGDMVYIEG
KLRTRSWEKDGVTRYTTEIVGDNMTMLTPKGMSEGGGTSPAPTRSQEPAPSQAGADIAIDDESDDLPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=639671 LVD17_RS09955 WP_255702577.1 2405990..2406436(+) (ssb) [Fulvivirga ulvae strain SS9-22]
ATGTCAGGAGTTAATAAAGTAATAATTGTTGGAAGGTTGGGAAAAGACCCTGAAGTAAGACATTTGGAGAGTGGAGCATC
TGTAGCCAATTTTCCGGTGGCTACTTCGGAAGTATATAAGGATAGAAATACGGGCGAAAGAAGAGAGCAAACCGAGTGGC
ACAACGTAGTGCTGTGGAGAGGTTTGGCAGAGATCGCAGAAAAATACCTTAACAAAGGTGATATGGTATACATCGAAGGT
AAGCTTCGTACCAGGTCCTGGGAAAAGGATGGTGTAACCAGGTATACAACAGAGATTGTTGGAGATAATATGACCATGCT
AACCCCTAAGGGTATGTCAGAGGGTGGTGGCACTTCACCAGCCCCGACAAGATCGCAGGAGCCGGCACCATCACAGGCGG
GAGCTGATATAGCTATTGATGACGAATCTGACGATCTGCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

43.333

100

0.527
  ssb Neisseria meningitidis MC58

41.04

100

0.48
  ssb Neisseria gonorrhoeae MS11

40.462

100

0.473
  ssb Vibrio cholerae strain A1552

49.265

91.892

0.453
  ssb Latilactobacillus sakei subsp. sakei 23K

32.948

100

0.385