Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LVD15_RS08435 Genome accession   NZ_CP089980
Coordinates   1983891..1984346 (+) Length   151 a.a.
NCBI ID   WP_233779858.1    Uniprot ID   -
Organism   Fulvivirga maritima strain SW1-E11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1978891..1989346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVD15_RS08415 (LVD15_08415) - 1979634..1981190 (-) 1557 WP_233779855.1 Rne/Rng family ribonuclease -
  LVD15_RS08420 (LVD15_08420) - 1981428..1982270 (-) 843 WP_233779856.1 lipopolysaccharide assembly protein LapB -
  LVD15_RS08425 (LVD15_08425) - 1982328..1982630 (-) 303 WP_202245591.1 HU family DNA-binding protein -
  LVD15_RS08430 (LVD15_08430) mutY 1982766..1983842 (+) 1077 WP_233779857.1 A/G-specific adenine glycosylase -
  LVD15_RS08435 (LVD15_08435) ssb 1983891..1984346 (+) 456 WP_233779858.1 single-stranded DNA-binding protein Machinery gene
  LVD15_RS08440 (LVD15_08440) gldE 1984380..1985723 (+) 1344 WP_233780947.1 gliding motility-associated protein GldE -
  LVD15_RS08445 (LVD15_08445) gldD 1985695..1986294 (+) 600 WP_233779859.1 gliding motility lipoprotein GldD -
  LVD15_RS08450 (LVD15_08450) recG 1986376..1988469 (+) 2094 WP_233779860.1 ATP-dependent DNA helicase RecG -
  LVD15_RS08455 (LVD15_08455) tpiA 1988521..1989282 (+) 762 WP_233779861.1 triose-phosphate isomerase -

Sequence

Protein


Download         Length: 151 a.a.        Molecular weight: 16579.21 Da        Isoelectric Point: 4.5939

>NTDB_id=639658 LVD15_RS08435 WP_233779858.1 1983891..1984346(+) (ssb) [Fulvivirga maritima strain SW1-E11]
MSGVNKVIIVGRLGRDPEVRHLESGASVANFPVATSEIYKDRNTGERREQTEWHNVVLWRGLADISEKYLNKGDMVYIEG
KLRTRSWEKDGITRYTTEIVGDNMTMLSPKGSNEGGSGPSSSGGGSSSSYQETSQPTADISMDDDTDDLPF

Nucleotide


Download         Length: 456 bp        

>NTDB_id=639658 LVD15_RS08435 WP_233779858.1 1983891..1984346(+) (ssb) [Fulvivirga maritima strain SW1-E11]
ATGTCTGGAGTAAATAAAGTGATAATTGTTGGTAGGTTAGGAAGAGATCCTGAAGTAAGACACTTAGAAAGTGGTGCTTC
GGTGGCAAATTTTCCGGTAGCTACTTCAGAAATTTACAAAGATAGAAACACAGGAGAGAGAAGAGAACAAACAGAATGGC
ACAATGTAGTACTATGGAGAGGCCTTGCTGATATTTCAGAGAAGTATCTAAATAAAGGTGACATGGTATATATAGAAGGT
AAGCTCAGAACCCGCTCATGGGAGAAAGATGGCATTACCAGATATACCACCGAAATAGTAGGGGATAACATGACCATGCT
TAGTCCTAAAGGTAGTAATGAAGGTGGTAGCGGGCCATCATCTTCAGGAGGAGGCTCTTCTTCTTCATATCAGGAAACAT
CTCAGCCTACTGCAGATATTTCTATGGATGATGATACTGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

42.222

100

0.503
  ssb Vibrio cholerae strain A1552

42.775

100

0.49
  ssb Neisseria meningitidis MC58

41.618

100

0.477
  ssb Neisseria gonorrhoeae MS11

48.872

88.079

0.43
  ssb Latilactobacillus sakei subsp. sakei 23K

31.977

100

0.364