Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   LXA49_RS11070 Genome accession   NZ_CP089949
Coordinates   2149734..2150915 (+) Length   393 a.a.
NCBI ID   WP_252948152.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SN75752     
Function   degrading CSP; selective degradation of ComEA and ComEC (predicted from homology)   
Competence regulation

Genomic Context


Location: 2144734..2155915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXA49_RS11030 (LXA49_11015) - 2145785..2146327 (+) 543 WP_001158266.1 TetR/AcrR family transcriptional regulator -
  LXA49_RS11045 (LXA49_11030) comE 2146570..2147322 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  LXA49_RS11050 (LXA49_11035) comD/comD1 2147319..2148644 (-) 1326 WP_000362880.1 competence system sensor histidine kinase ComD Regulator
  LXA49_RS11055 (LXA49_11040) comC/comC1 2148665..2148790 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  LXA49_RS11065 (LXA49_11050) rlmH 2149072..2149551 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  LXA49_RS11070 (LXA49_11055) htrA 2149734..2150915 (+) 1182 WP_252948152.1 S1C family serine protease Regulator
  LXA49_RS11075 (LXA49_11060) spo0J 2150973..2151731 (+) 759 WP_000410378.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 393 a.a.        Molecular weight: 41854.72 Da        Isoelectric Point: 6.8902

>NTDB_id=639463 LXA49_RS11070 WP_252948152.1 2149734..2150915(+) (htrA) [Streptococcus pneumoniae strain SN75752]
MKHLKTFYKKWFQLLVVIVISFFSGALGSFSITQLTQKNSVNNSNNNSTITQTAYKNENSTTQAVNKVKDAVVSVITYSA
NRQNSVFGNDDTDTDSQRISSEGSGVIYKKNDKEAYIVTNNHVINGASKVDIRLSDGTKVPGEIVGADTFSDIAVVKISS
EKVTTVAEFGDSSKLTVGETAIAIGSPLGSEYANTVTQGIVSSLNRNVSLKSEDGQAISTKAIQTDTAINPGNSGGPLIN
IQGQVIGITSSKIATNGGTSVEGLGFAIPANDAINIIEQLEKNGKVTRPALGIQMVNLSNVSTSDIRRLNIPSNVTSGVV
VRSVQSNMPANGHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITYYRNGKEETTSIKLNKSSGDLES

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=639463 LXA49_RS11070 WP_252948152.1 2149734..2150915(+) (htrA) [Streptococcus pneumoniae strain SN75752]
ATGAAACATCTAAAAACATTTTACAAAAAATGGTTTCAATTATTAGTCGTTATCGTCATTAGCTTTTTTAGTGGAGCCTT
GGGTAGTTTTTCAATAACTCAACTAACTCAAAAAAATAGTGTAAACAACTCTAACAACAATAGTACTATTACACAAACTG
CCTATAAGAACGAAAATTCAACAACACAGGCTGTTAACAAAGTAAAAGATGCTGTTGTTTCTGTTATTACTTATTCGGCA
AACAGACAAAATAGCGTATTTGGCAATGATGATACTGACACAGATTCTCAGCGAATCTCTAGTGAAGGATCTGGAGTTAT
TTATAAAAAGAATGATAAAGAAGCTTACATCGTCACCAACAATCACGTTATAAATGGCGCCAGCAAAGTAGATATTCGAT
TGTCAGATGGGACTAAAGTACCTGGAGAAATTGTCGGAGCTGACACTTTCTCTGATATTGCTGTCGTAAAAATCTCTTCA
GAAAAAGTGACAACAGTAGCTGAGTTTGGTGATTCTAGTAAGTTAACTGTAGGAGAAACTGCTATTGCCATCGGTAGCCC
GTTAGGTTCTGAATATGCAAATACTGTCACTCAAGGTATCGTATCCAGTCTCAATAGAAATGTATCCTTAAAATCGGAAG
ATGGACAAGCTATTTCTACAAAAGCCATCCAAACTGATACTGCTATTAACCCAGGTAACTCTGGCGGCCCACTGATCAAT
ATTCAAGGGCAGGTTATCGGAATTACCTCAAGTAAAATTGCTACAAATGGAGGAACATCTGTAGAAGGTCTTGGTTTCGC
AATTCCTGCAAATGATGCTATCAATATTATTGAACAGTTAGAAAAAAACGGAAAAGTGACGCGTCCAGCTTTGGGAATCC
AGATGGTTAATTTATCTAATGTGAGTACAAGCGACATCAGAAGACTCAATATTCCAAGTAATGTTACATCTGGTGTAGTT
GTTCGTTCGGTACAAAGTAATATGCCTGCCAATGGTCACCTTGAAAAATACGATGTAATTACAAAAGTAGATGACAAAGA
GATTGCTTCATCAACAGACTTACAAAGTGCTCTTTACAACCATTCTATCGGAGACACCATTAAGATAACCTACTATCGTA
ACGGGAAAGAAGAAACTACCTCTATCAAACTTAACAAGAGTTCAGGTGATTTAGAATCTTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus pneumoniae Rx1

99.491

100

0.995

  htrA Streptococcus pneumoniae D39

99.491

100

0.995

  htrA Streptococcus pneumoniae R6

99.491

100

0.995

  htrA Streptococcus pneumoniae TIGR4

99.491

100

0.995

  htrA Streptococcus mitis NCTC 12261

97.201

100

0.972

  htrA Streptococcus gordonii str. Challis substr. CH1

66.414

100

0.669

  htrA Streptococcus mutans UA159

54.822

100

0.55