Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LU604_RS24965 Genome accession   NZ_CP089942
Coordinates   4720007..4721530 (+) Length   507 a.a.
NCBI ID   WP_233479506.1    Uniprot ID   A0A345CWK6
Organism   Erwinia tracheiphila strain MDCuke     
Function   require for natural transformation (predicted from homology)   
Unclear

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 4721715..4726872 4720007..4721530 flank 185


Gene organization within MGE regions


Location: 4720007..4726872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LU604_RS24965 (LU604_24965) comM 4720007..4721530 (+) 1524 WP_233479506.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LU604_RS24970 (LU604_24970) - 4721715..4722925 (-) 1211 Protein_4934 IS256 family transposase -
  LU604_RS24975 (LU604_24975) - 4723003..4723991 (-) 989 Protein_4935 DDE-type integrase/transposase/recombinase -
  LU604_RS24980 (LU604_24980) - 4724103..4724494 (-) 392 Protein_4936 transposase -
  LU604_RS24985 (LU604_24985) - 4724744..4725082 (-) 339 WP_016191555.1 DUF413 domain-containing protein -
  LU604_RS24990 (LU604_24990) hdfR 4725203..4726027 (+) 825 WP_016191556.1 HTH-type transcriptional regulator HdfR -
  LU604_RS24995 (LU604_24995) - 4726175..4726872 (+) 698 WP_233479508.1 IS1 family transposase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55469.63 Da        Isoelectric Point: 7.7896

>NTDB_id=639302 LU604_RS24965 WP_233479506.1 4720007..4721530(+) (comM) [Erwinia tracheiphila strain MDCuke]
MALSVTYTRAAIGVEAPQVSVEVHLSNGLPALTLVGLPEATVKEARERVRSAILNCGFTFPARRITINLAPADLPKEGGR
YDLPIAIAILAASEQISVNKLEEYEFLGELALNGIIRGVQGAIPAAIAAIGSGRQTILSSDNRSEAGLIRHGNCLLSHTL
LEVCDFLNGQEELKVASYEPQALPPLHGDLQDIIGQQQAKRTLEITAAGGHNLLLIGPPGTGKTMLASRLPGLMPPLSDD
EALESAAIASLVSSNETLRQWRQRPFRAPHHTSSRYALVGGGALPKPGEISLAHNGILFLDELPEFERKTLDALREPIES
GVICISRARAKVIYPARFQLVAAMNPSPTGHHNGTHNRSSPQQILRYLSRLSGPFLDRFDLSLEVPLLPQGTLSNNMHCL
GESSETIRQRVFKARERQLARAGVINQSIGPEEIKWSCSIRQDDARWLEEVLNKLGLSVRAWQRILKVARTIADLAGEEK
IQREHLNESLSYRAIDRLLIHLQKNLQ

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=639302 LU604_RS24965 WP_233479506.1 4720007..4721530(+) (comM) [Erwinia tracheiphila strain MDCuke]
ATGGCATTATCTGTGACTTATACCCGTGCAGCCATCGGAGTGGAGGCACCGCAGGTTTCTGTTGAAGTTCATTTGAGCAA
TGGCCTGCCAGCCCTTACGCTGGTTGGTTTGCCCGAGGCTACCGTTAAAGAAGCGCGTGAACGCGTCCGCAGCGCTATAC
TTAATTGTGGGTTCACTTTTCCTGCCCGGCGTATAACCATCAATCTGGCCCCAGCCGATCTGCCAAAAGAAGGCGGACGC
TATGATTTACCCATCGCTATCGCCATTCTGGCGGCCTCAGAACAAATATCAGTAAACAAACTTGAGGAATATGAATTTCT
TGGAGAACTGGCTCTGAATGGCATCATAAGAGGCGTTCAGGGTGCCATTCCAGCGGCGATAGCGGCTATCGGTTCTGGAA
GGCAGACTATTCTTTCCAGCGACAATCGTTCAGAAGCAGGTTTGATTCGCCATGGCAATTGTCTGCTCAGTCACACCCTG
CTGGAGGTCTGTGATTTTCTGAATGGTCAGGAGGAACTTAAGGTTGCTAGCTATGAGCCACAAGCATTGCCCCCCTTGCA
TGGTGATTTGCAGGATATTATTGGACAGCAACAGGCTAAGAGAACGCTTGAAATCACTGCTGCTGGCGGACATAACTTAC
TATTAATAGGCCCTCCCGGCACGGGCAAAACCATGCTTGCCAGTCGGCTTCCCGGTCTGATGCCTCCCTTAAGCGACGAT
GAAGCGCTGGAAAGTGCAGCGATTGCAAGCCTGGTCAGCAGTAATGAGACGCTGCGTCAATGGCGTCAGCGCCCTTTCAG
GGCTCCCCATCATACATCTTCTCGTTATGCGCTGGTTGGCGGTGGAGCGCTTCCTAAACCGGGAGAAATCTCTTTGGCAC
ATAACGGCATCCTTTTTCTGGACGAGCTGCCTGAATTTGAACGTAAAACACTGGATGCATTACGGGAACCTATTGAGTCA
GGTGTAATATGTATTTCACGGGCACGAGCTAAAGTTATCTACCCCGCTCGTTTTCAACTGGTTGCAGCGATGAATCCCAG
TCCGACAGGCCATCATAACGGCACGCACAATCGCAGTTCACCACAGCAGATCCTTCGCTATCTTAGTCGCCTGTCCGGCC
CCTTTCTGGACCGTTTTGATCTCTCACTGGAAGTCCCCCTTCTCCCACAAGGCACGCTCAGTAACAATATGCATTGTTTG
GGTGAATCCAGTGAAACAATTCGCCAGCGCGTATTTAAAGCGCGTGAGCGTCAGCTTGCTCGCGCTGGGGTTATTAATCA
GTCAATTGGACCAGAGGAAATTAAATGGAGCTGTAGTATCAGACAGGATGATGCACGCTGGCTTGAGGAGGTGTTGAATA
AGCTGGGGCTGTCTGTTCGCGCCTGGCAGCGTATTCTGAAGGTGGCGCGGACAATTGCAGATTTGGCTGGTGAGGAAAAA
ATACAGCGCGAGCACCTGAATGAAAGTCTGAGCTATCGGGCAATCGATCGGCTACTCATCCATTTACAAAAAAACCTGCA
GTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345CWK6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.13

100

0.621
  comM Glaesserella parasuis strain SC1401

61.933

100

0.619
  comM Vibrio cholerae strain A1552

61.265

99.803

0.611
  comM Vibrio campbellii strain DS40M4

59.245

99.211

0.588
  comM Legionella pneumophila str. Paris

49.105

99.211

0.487
  comM Legionella pneumophila strain ERS1305867

49.105

99.211

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.759

100

0.458